The social network of a cell: recent advances in interactome mapping.

作者: Sebastian Charbonnier , Oriol Gallego , Anne-Claude Gavin

DOI: 10.1016/S1387-2656(08)00001-X

关键词: Emerging technologiesScale (chemistry)BiologyComputational biologyNanotechnologySocial networkAdaptation (computer science)Interactome

摘要: Abstract Proteins very rarely act in isolation. Biomolecular interactions are central to all biological functions. In human, for example, interference with biomolecular networks often lead disease. Protein–protein and protein–metabolite have traditionally been studied one by one. Recently, significant progresses made adapting suitable tools the global analysis of interactions. Here we review this suite powerful technologies that enable an exponentially growing number large-scale interaction datasets. These new already contributed a more comprehensive cartography several pathways relevant human pathologies, offering broader choice therapeutic targets. Genome-wide scale analyses model organisms reveal general organizational principles eukaryotic proteomes. We also biochemical approaches used past on smaller quantification binding constant thermodynamics parameters governing interaction. The adaptation these measurement (semi-)quantitative terms represents important challenge.

参考文章(128)
I. Barroso, M. Gurnell, V. E. F. Crowley, M. Agostini, J. W. Schwabe, M. A. Soos, G. LI Maslen, T. D. M. Williams, H. Lewis, A. J. Schafer, V. K. K. Chatterjee, S. O'Rahilly, Dominant negative mutations in human PPARγ associated with severe insulin resistance, diabetes mellitus and hypertension Nature. ,vol. 402, pp. 880- 883 ,(1999) , 10.1038/47254
Tewis Bouwmeester, Angela Bauch, Heinz Ruffner, Pierre-Olivier Angrand, Giovanna Bergamini, Karen Croughton, Cristina Cruciat, Dirk Eberhard, Julien Gagneur, Sonja Ghidelli, Carsten Hopf, Bettina Huhse, Raffaella Mangano, Anne-Marie Michon, Markus Schirle, Judith Schlegl, Markus Schwab, Martin A. Stein, Andreas Bauer, Georg Casari, Gerard Drewes, Anne-Claude Gavin, David B. Jackson, Gerard Joberty, Gitte Neubauer, Jens Rick, Bernhard Kuster, Giulio Superti-Furga, A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. Nature Cell Biology. ,vol. 6, pp. 97- 105 ,(2004) , 10.1038/NCB1086
Holger Husi, Malcolm A. Ward, Jyoti S. Choudhary, Walter P. Blackstock, Seth G. N. Grant, Proteomic analysis of NMDA receptor-adhesion protein signaling complexes. Nature Neuroscience. ,vol. 3, pp. 661- 669 ,(2000) , 10.1038/76615
Wojciech Wiszniewski, Marie-Claude Fondaneche, Pascale Louise-Plence, Ada Prochnicka-Chalufour, Françoise Selz, Cappucine Picard, Françoise Le Deist, Jean-François Eliaou, Alain Fischer, Barbara Lisowska-Grospierre, Novel mutations in the RFXANK gene: RFX complex containing in-vitro-generated RFXANK mutant binds the promoter without transactivating MHC II Immunogenetics. ,vol. 54, pp. 747- 755 ,(2003) , 10.1007/S00251-002-0521-1
Guillaume Rigaut, Anna Shevchenko, Berthold Rutz, Matthias Wilm, Matthias Mann, Bertrand Séraphin, None, A generic protein purification method for protein complex characterization and proteome exploration. Nature Biotechnology. ,vol. 17, pp. 1030- 1032 ,(1999) , 10.1038/13732
J Jiang, L Abu-Shilbayeh, V B Rao, Display of a PorA peptide from Neisseria meningitidis on the bacteriophage T4 capsid surface. Infection and Immunity. ,vol. 65, pp. 4770- 4777 ,(1997) , 10.1128/IAI.65.11.4770-4777.1997
A Aronheim, E Zandi, H Hennemann, S J Elledge, M Karin, Isolation of an AP-1 repressor by a novel method for detecting protein-protein interactions. Molecular and Cellular Biology. ,vol. 17, pp. 3094- 3102 ,(1997) , 10.1128/MCB.17.6.3094
Heng Zhu, Metin Bilgin, Rhonda Bangham, David Hall, Antonio Casamayor, Paul Bertone, Ning Lan, Ronald Jansen, Scott Bidlingmaier, Thomas Houfek, Tom Mitchell, Perry Miller, Ralph A Dean, Mark Gerstein, Michael Snyder, None, Global Analysis of Protein Activities Using Proteome Chips Science. ,vol. 293, pp. 2101- 2105 ,(2001) , 10.1126/SCIENCE.1062191
Kathleen N. Ehrhard, Jörg J. Jacoby, Xin-Yuan Fu, Reinhard Jahn, Henrik G. Dohlman, Use of G-protein fusions to monitor integral membrane protein-protein interactions in yeast. Nature Biotechnology. ,vol. 18, pp. 1075- 1079 ,(2000) , 10.1038/80274
QH Gibson, L Milnes, Apparatus for rapid and sensitive spectrophotometry Biochemical Journal. ,vol. 91, pp. 161- 171 ,(1964) , 10.1042/BJ0910161