Multi-Omic Biogeography of the Gastrointestinal Microbiota of a Pre-Weaned Lamb.

作者: Antonio Palomba , Alessandro Tanca , Cristina Fraumene , Marcello Abbondio , Francesco Fancello

DOI: 10.3390/PROTEOMES5040036

关键词: Microbiota compositionGastrointestinal microbiotaDietary interventionsDigestive functionsMetaproteomicsZoologyBiology

摘要: The digestive functions of the pre-weaned lamb gastrointestinal tracts (GITs) have been subject much research in recent years, but microbial and host underlying these complex processes remain largely unknown. Here, we undertook a proof-of-principle metaproteogenomic investigation on luminal mucosal samples collected from 10 GITs 30-day-old lamb. We demonstrate that analysis diverse ecological niches along can reveal microbiota composition metabolic functions, although low amounts proteins could be identified small intestinal samples. Our data suggest 30-day has already developed mature forestomachs, while effect milky diet appears to more evident remaining GITs. also report distribution relative abundance active at GIT level, with special focus those involved processes. In conclusion, this pilot study supports suitability approach characterization GITs, opening way further studies aimed investigating impact early dietary interventions ruminants.

参考文章(56)
MA Lane, VI Baldwin, RL, Jesse, BW, None, Sheep rumen metabolic development in response to age and dietary treatments. Journal of Animal Science. ,vol. 78, pp. 1990- 1996 ,(2000) , 10.2527/2000.7871990X
Gemma Henderson, Faith Cox, Siva Ganesh, Arjan Jonker, Wayne Young, Leticia Abecia, Erika Angarita, Paula Aravena, Graciela Nora Arenas, Claudia Ariza, Graeme T Attwood, Jose Mauricio Avila, Jorge Avila-Stagno, André Bannink, Rolando Barahona, Mariano Batistotti, Mads F Bertelsen, Aya Brown-Kav, Andres M Carvajal, Laura Cersosimo, Alexandre Vieira Chaves, John Church, Nicholas Clipson, Mario A Cobos-Peralta, Adrian L Cookson, Silvio Cravero, Omar Cristobal Carballo, Katie Crosley, Gustavo Cruz, María Cerón Cucchi, Rodrigo de la Barra, Alexandre B De Menezes, Edenio Detmann, Kasper Dieho, Jan Dijkstra, William LS dos Reis, Mike ER Dugan, Seyed Hadi Ebrahimi, Emma Eythórsdóttir, Fabian Nde Fon, Martín Fraga, Francisco Franco, Chris Friedeman, Naoki Fukuma, Dragana Gagić, Isabelle Gangnat, Diego Javier Grilli, Vahideh Heidarian Miri, Emma Hernandez-Sanabria, Alma Ximena Ibarra Gomez, Olubukola A Isah, Suzanne Ishaq, Elie Jami, Juan Jelincic, Juha Kantanen, William J Kelly, Seon-Ho Kim, Athol Klieve, Yasuo Kobayashi, Satoshi Koike, Jan Kopecny, Torsten Nygaard Kristensen, Sophie Julie Krizsan, Hannah LaChance, Medora Lachman, William R Lamberson, Suzanne Lambie, Jan Lassen, Sinead C Leahy, Sang-Suk Lee, Florian Leiber, Eva Lewis, Bo Lin, Raúl Lira, Peter Lund, Edgar Macipe, Lovelia L Mamuad, Hilário Cuquetto Mantovani, Gisela Ariana Marcoppido, Cristian Márquez, Cécile Martin, Gonzalo Martinez, Maria Eugenia Martinez, Olga Lucía Mayorga, Tim A McAllister, Chris McSweeney, Lorena Mestre, Elena Minnee, Makoto Mitsumori, Itzhak Mizrahi, Isabel Molina, Andreas Muenger, Camila Muñoz, Bostjan Murovec, John Newbold, Victor Nsereko, Michael O’Donovan, Sunday Okunade, Brendan O’Neill, Sonia Ospina, Diane Ouwerkerk, Diana Parra, Luiz Gustavo Ribeiro Pereira, Cesar Pinares-Patiño, Phil B Pope, Morten Poulsen, Markus Rodehutscord, Tatiana Rodriguez, Kunihiko Saito, Francisco Sales, Catherine Sauer, Kevin Shingfield, Noriaki Shoji, Jiri Simunek, Zorica Stojanović-Radić, Blaz Stres, Xuezhao Sun, Jeffery Swartz, Zhi Liang Tan, Ilma Tapio, Tasia M Taxis, Nigel Tomkins, Emilio Ungerfeld, Reza Valizadeh, Peter van Adrichem, Jonathan Van Hamme, Woulter Van Hoven, Garry Waghorn, R John Wallace, Min Wang, Sinéad M Waters, Kate Keogh, Maren Witzig, Andre-Denis G Wright, Hidehisa Yamano, Tianhai Yan, David R Yáñez-Ruiz, Carl J Yeoman, Ricardo Zambrano, Johanna Zeitz, Mi Zhou, Hua Wei Zhou, Cai Xia Zou, Pablo Zunino, Peter H Janssen, Global Rumen Census Collaborators, Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range Scientific Reports. ,vol. 5, pp. 19175- 19175 ,(2015) , 10.1038/SREP14567
R.L. Baldwin, K.R. McLeod, J.L. Klotz, R.N. Heitmann, Rumen Development, Intestinal Growth and Hepatic Metabolism In The Pre- and Postweaning Ruminant Journal of Dairy Science. ,vol. 87, ,(2004) , 10.3168/JDS.S0022-0302(04)70061-2
J. Šimůnek, V. Skřivanová, I. Hoza, P. Březina, M. Marounek, Ontogenesis of enzymatic activities in the gastrointestinal tract of young goats Small Ruminant Research. ,vol. 17, pp. 207- 211 ,(1995) , 10.1016/0921-4488(95)00678-E
Thilo Muth, Carolin A. Kolmeder, Jarkko Salojärvi, Salla Keskitalo, Markku Varjosalo, Froukje J. Verdam, Sander S. Rensen, Udo Reichl, Willem M. de Vos, Erdmann Rapp, Lennart Martens, Navigating through metaproteomics data: A logbook of database searching Proteomics. ,vol. 15, pp. 3439- 3453 ,(2015) , 10.1002/PMIC.201400560
S. Li, E. Khafipour, D.O. Krause, A. Kroeker, J.C. Rodriguez-Lecompte, G.N. Gozho, J.C. Plaizier, Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows. Journal of Dairy Science. ,vol. 95, pp. 294- 303 ,(2012) , 10.3168/JDS.2011-4447
Alessandro Tanca, Grazia Biosa, Daniela Pagnozzi, Maria Filippa Addis, Sergio Uzzau, Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome Proteomics. ,vol. 13, pp. 2597- 2607 ,(2013) , 10.1002/PMIC.201200478
M. Rey, F. Enjalbert, V. Monteils, Establishment of ruminal enzyme activities and fermentation capacity in dairy calves from birth through weaning Journal of Dairy Science. ,vol. 95, pp. 1500- 1512 ,(2012) , 10.3168/JDS.2011-4902
A. C. I. Warner, Proteolysis by rumen micro-organisms. Microbiology. ,vol. 14, pp. 749- 762 ,(1956) , 10.1099/00221287-14-3-749