Genome-wide identification and characterization of phospholipase C gene family in cotton ( Gossypium spp.)
作者： Bing Zhang , Yanmei Wang , Jin-Yuan Liu
DOI: 10.1007/S11427-017-9053-Y
关键词: Gene family 、 Genetics 、 Phospholipase C 、 MYB 、 Gene 、 Abiotic stress 、 Gene expression profiling 、 Biology 、 Arabidopsis 、 Genome
摘要: Phospholipase C (PLC) are important regulatory enzymes involved in several lipid and Ca2+-dependent signaling pathways. Previous studies have elucidated the versatile roles of PLC genes growth, development stress responses many plants, however, systematic analyses fiber-producing plant, cotton, still deficient. In this study, through genome-wide survey, we identified twelve phosphatidylinositol-specific (PI-PLC) nine non-specific (NPC) allotetraploid upland cotton Gossypium hirsutum PI-PLC six NPC two diploid G. arboretum G.raimondii, respectively. The showed close phylogenetic relationship with their homologous cottons Arabidopsis. Segmental tandem duplication contributed greatly to formation gene family. Expression profiling indicated that few constitutely expressed, whereas most preferentially expressed specific tissues abiotic conditions. Promoter further implied expression these might be regulated by MYB transcription factors different phytohormones. These results not only suggest an role phospholipase members plant response but also provide good candidate targets for future molecular breeding superior cultivars.
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Aurelie Gresset, John Sondek, T. Kendall Harden, The phospholipase C isozymes and their regulation. Sub-cellular biochemistry. ,vol. 58, pp. 61- 94 ,(2012) , 10.1007/978-94-007-3012-0_3
Stephen J. Gaunt, The significance of Hox gene collinearity. The International Journal of Developmental Biology. ,vol. 59, pp. 159- 170 ,(2015) , 10.1387/IJDB.150223SG
Jie-Yin Chen, Jin-Qun Huang, Nan-Yang Li, Xue-Feng Ma, Jin-Long Wang, Chuan Liu, Yong-Feng Liu, Yong Liang, Yu-Ming Bao, Xiao-Feng Dai, Genome-wide analysis of the gene families of resistance gene analogues in cotton and their response to Verticillium wilt BMC Plant Biology. ,vol. 15, pp. 148- 148 ,(2015) , 10.1186/S12870-015-0508-3
Gao-Jun Liu, Guang-Hui Xiao, Ning-Jing Liu, Dan Liu, Pei-Shuang Chen, Yong-Mei Qin, Yu-Xian Zhu, Targeted Lipidomics Studies Reveal that Linolenic Acid Promotes Cotton Fiber Elongation by Activating Phosphatidylinositol and Phosphatidylinositol Monophosphate Biosynthesis Molecular Plant. ,vol. 8, pp. 911- 921 ,(2015) , 10.1016/J.MOLP.2015.02.010
Changsong Zou, Cairui Lu, Haihong Shang, Xinrui Jing, Hailiang Cheng, Youping Zhang, Guoli Song, Genome‐Wide Analysis of the Sus Gene Family in Cotton Journal of Integrative Plant Biology. ,vol. 55, pp. 643- 653 ,(2013) , 10.1111/JIPB.12068
Bing Zhang, A genome-wide survey of glycolytic genes in diploid Asian cotton ( Gossypium arboreum ) Plant Gene. ,vol. 4, pp. 1- 9 ,(2015) , 10.1016/J.PLGENE.2015.09.001
KEITH L. ADAMS, JONATHAN F. WENDEL, Exploring the genomic mysteries of polyploidy in cotton Biological Journal of The Linnean Society. ,vol. 82, pp. 573- 581 ,(2004) , 10.1111/J.1095-8312.2004.00342.X
CARLOTTA PETERS, SANG-CHUL KIM, SHIVAKUMAR DEVAIAH, MAOYIN LI, XUEMIN WANG, Non-specific phospholipase C5 and diacylglycerol promote lateral root development under mild salt stress in Arabidopsis. Plant Cell and Environment. ,vol. 37, pp. 2002- 2013 ,(2014) , 10.1111/PCE.12334
Andrew H Paterson, Jonathan F Wendel, Heidrun Gundlach, Hui Guo, Jerry Jenkins, Dianchuan Jin, Danny Llewellyn, Kurtis C Showmaker, Shengqiang Shu, Joshua Udall, Mi-jeong Yoo, Robert Byers, Wei Chen, Adi Doron-Faigenboim, Mary V Duke, Lei Gong, Jane Grimwood, Corrinne Grover, Kara Grupp, Guanjing Hu, Tae-ho Lee, Jingping Li, Lifeng Lin, Tao Liu, Barry S Marler, Justin T Page, Alison W Roberts, Elisson Romanel, William S Sanders, Emmanuel Szadkowski, Xu Tan, Haibao Tang, Chunming Xu, Jinpeng Wang, Zining Wang, Dong Zhang, Lan Zhang, Hamid Ashrafi, Frank Bedon, John E Bowers, Curt L Brubaker, Peng W Chee, Sayan Das, Alan R Gingle, Candace H Haigler, David Harker, Lucia V Hoffmann, Ran Hovav, Donald C Jones, Cornelia Lemke, Shahid Mansoor, Mehboob ur Rahman, Lisa N Rainville, Aditi Rambani, Umesh K Reddy, Jun-kang Rong, Yehoshua Saranga, Brian E Scheffler, Jodi A Scheffler, David M Stelly, Barbara A Triplett, Allen Van Deynze, Maite FS Vaslin, Vijay N Waghmare, Sally A Walford, Robert J Wright, Essam A Zaki, Tianzhen Zhang, Elizabeth S Dennis, Klaus FX Mayer, Daniel G Peterson, Daniel S Rokhsar, Xiyin Wang, Jeremy Schmutz, None, Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres Nature. ,vol. 492, pp. 423- 427 ,(2012) , 10.1038/NATURE11798
Igor Pokotylo, Yaroslav Kolesnikov, Volodymyr Kravets, Alain Zachowski, Eric Ruelland, Plant phosphoinositide-dependent phospholipases C: variations around a canonical theme. Biochimie. ,vol. 96, pp. 144- 157 ,(2014) , 10.1016/J.BIOCHI.2013.07.004