Genome-wide identification and gene expression pattern of ABC transporter gene family in Capsicum spp.

作者: Carlos Lopez-Ortiz , Sudip Kumar Dutta , Purushothaman Natarajan , Yadira Peña-Garcia , Venkata Abburi

DOI: 10.1371/JOURNAL.PONE.0215901

关键词: Capsicum chinenseGeneticsBiologyGene expression profilingATP-binding cassette transporterCandidate geneCapsicum baccatumRegulation of gene expressionGeneGene family

摘要: … that the major markers linked to capsaicinoid synthesis are ankyrin-like protein, the IKI3 protein family and the ATP-binding cassette (… rapa and pineapple [20, 58, 59]. Among the 572 …

参考文章(91)
T. G. E. Davies, J. O. D. Coleman, The Arabidopsis thaliana ATP‐binding cassette proteins: an emerging superfamily Plant Cell and Environment. ,vol. 23, pp. 431- 443 ,(2000) , 10.1046/J.1365-3040.2000.00577.X
Marcel Martin, Cutadapt removes adapter sequences from high-throughput sequencing reads EMBnet.journal. ,vol. 17, pp. 10- 12 ,(2011) , 10.14806/EJ.17.1.200
Francesco Cerino Badone, Elena Cassani, Michela Landoni, Enrico Doria, Dario Panzeri, Chiara Lago, Francesca Mesiti, Erik Nielsen, Roberto Pilu, The low phytic acid1-241 (lpa1-241) maize mutation alters the accumulation of anthocyanin pigment in the kernel Planta. ,vol. 231, pp. 1189- 1199 ,(2010) , 10.1007/S00425-010-1123-Z
Yusuke Tagashira, Tomoe Shimizu, Masanobu Miyamoto, Sho Nishida, Kaoru Yoshida, Overexpression of a Gene Involved in Phytic Acid Biosynthesis Substantially Increases Phytic Acid and Total Phosphorus in Rice Seeds. Plants (Basel, Switzerland). ,vol. 4, pp. 196- 208 ,(2015) , 10.3390/PLANTS4020196
Takashi Kuromori, Takuya Ito, Eriko Sugimoto, Kazuo Shinozaki, Arabidopsis mutant of AtABCG26, an ABC transporter gene, is defective in pollen maturation. Journal of Plant Physiology. ,vol. 168, pp. 2001- 2005 ,(2011) , 10.1016/J.JPLPH.2011.05.014
Kaiyuan Pang, Yanjiao Li, Menghan Liu, Zhaodong Meng, Yanli Yu, Inventory and general analysis of the ATP-binding cassette (ABC) gene superfamily in maize (Zea mays L.). Gene. ,vol. 526, pp. 411- 428 ,(2013) , 10.1016/J.GENE.2013.05.051
Van Ngoc Tuyet Nguyen, Sunok Moon, Ki-Hong Jung, Genome-wide expression analysis of rice ABC transporter family across spatio-temporal samples and in response to abiotic stresses. Journal of Plant Physiology. ,vol. 171, pp. 1276- 1288 ,(2014) , 10.1016/J.JPLPH.2014.05.006
Olivier Garcia, Philippe Bouige, Cyrille Forestier, Elie Dassa, Inventory and Comparative Analysis of Rice and Arabidopsis ATP-binding Cassette (ABC) Systems Journal of Molecular Biology. ,vol. 343, pp. 249- 265 ,(2004) , 10.1016/J.JMB.2004.07.093
Tomohiko Kato, Satoshi Tabata, Shusei Sato, Analyses of expression and phenotypes of knockout lines for Arabidopsis ABCF subfamily members Plant Biotechnology. ,vol. 26, pp. 409- 414 ,(2009) , 10.5511/PLANTBIOTECHNOLOGY.26.409
Ana Garcés-Claver, Shanna Moore Fellman, Ramiro Gil-Ortega, Molly Jahn, María S. Arnedo-Andrés, Identification, validation and survey of a single nucleotide polymorphism (SNP) associated with pungency in Capsicum spp. Theoretical and Applied Genetics. ,vol. 115, pp. 907- 916 ,(2007) , 10.1007/S00122-007-0617-Y