Local chromatin microenvironment determines DNMT activity : from DNA methyltransferase to DNA demethylase or DNA dehydroxymethylase

作者: Monique G P van der Wijst , Muralidhar Venkiteswaran , Hui Chen , Guo-Liang Xu , Torsten Plösch

DOI: 10.1080/15592294.2015.1062204

关键词: DNA methylationBiologyDemethylase activity5-MethylcytosineMethyltransferaseChromatinDNA methyltransferaseDNA demethylationDemethylaseBiochemistry

摘要: Insights on active DNA demethylation disproved the original assumption that methylation is a stable epigenetic modification. Interestingly, mammalian methyltransferases 3A and 3B (DNMT-3A -3B) have also been reported to induce demethylation, in addition their well-known function catalyzing methylation. In situations of extremely low levels S-adenosyl methionine (SAM), DNMT-3A -3B might demethylate C-5 methyl cytosine (5mC) via deamination thymine, which subsequently replaced by an unmodified through base excision repair (BER) pathway. Alternatively, 5mC when converted 5- hydroxymethylcytosine (5hmC) TET enzymes, be further modified under oxidized redox conditions, although exact pathways are yet elucidated. even direct conversion catalyzed DNMTs. Here, we summarize evidence dehydroxymethylase demethylase activity -3B. Although physiological relevance needs demonstrated, current indications 5mC- 5hmC-modifying activities de novo shed new light these enzymes. Despite extreme circumstances required for such unexpected reactions occur, here put forward chromatin microenvironment can locally exposed hypothesize waves extremes allow enzymes act differential ways.

参考文章(58)
Nidhi Bhutani, Jennifer J. Brady, Mara Damian, Alessandra Sacco, Stéphane Y. Corbel, Helen M. Blau, Reprogramming towards pluripotency requires AID-dependent DNA demethylation Nature. ,vol. 463, pp. 1042- 1047 ,(2010) , 10.1038/NATURE08752
Raphaël Métivier, Rozenn Gallais, Christophe Tiffoche, Christine Le Péron, Renata Z. Jurkowska, Richard P. Carmouche, David Ibberson, Peter Barath, Florence Demay, George Reid, Vladimir Benes, Albert Jeltsch, Frank Gannon, Gilles Salbert, Cyclical DNA methylation of a transcriptionally active promoter Nature. ,vol. 452, pp. 45- 50 ,(2008) , 10.1038/NATURE06544
Daniel Globisch, Martin Münzel, Markus Müller, Stylianos Michalakis, Mirko Wagner, Susanne Koch, Tobias Brückl, Martin Biel, Thomas Carell, Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates PLoS ONE. ,vol. 5, pp. e15367- ,(2010) , 10.1371/JOURNAL.PONE.0015367
Stefan Schiesser, Benjamin Hackner, Toni Pfaffeneder, Markus Müller, Christian Hagemeier, Matthias Truss, Thomas Carell, Mechanism and Stem-Cell Activity of 5-Carboxycytosine Decarboxylation Determined by Isotope Tracing Angewandte Chemie International Edition. ,vol. 51, pp. 6516- 6520 ,(2012) , 10.1002/ANIE.201202583
Junjie U. Guo, Yijing Su, Chun Zhong, Guo-li Ming, Hongjun Song, Hydroxylation of 5-Methylcytosine by TET1 Promotes Active DNA Demethylation in the Adult Brain Cell. ,vol. 145, pp. 423- 434 ,(2011) , 10.1016/J.CELL.2011.03.022
Federico Forneris, Claudia Binda, Elena Battaglioli, Andrea Mattevi, LSD1: oxidative chemistry for multifaceted functions in chromatin regulation Trends in Biochemical Sciences. ,vol. 33, pp. 181- 189 ,(2008) , 10.1016/J.TIBS.2008.01.003
Li Shen, Hao Wu, Dinh Diep, Shinpei Yamaguchi, Ana C. D’Alessio, Ho-Lim Fung, Kun Zhang, Yi Zhang, Genome-wide Analysis Reveals TET- and TDG-Dependent 5-Methylcytosine Oxidation Dynamics Cell. ,vol. 153, pp. 692- 706 ,(2013) , 10.1016/J.CELL.2013.04.002
Jaehoon Shin, Guo-li Ming, Hongjun Song, Molecular Toggle Switch of Histone Demethylase LSD1 Molecular Cell. ,vol. 57, pp. 949- 950 ,(2015) , 10.1016/J.MOLCEL.2015.03.007
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li, Yan Sun, Xiuxue Li, Qing Dai, Chun-Xiao Song, Kangling Zhang, Chuan He, Guo-Liang Xu, Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA Science. ,vol. 333, pp. 1303- 1307 ,(2011) , 10.1126/SCIENCE.1210944