Discovery and functional characterization of cardiovascular long noncoding RNAs

作者: Samir Ounzain , Frédéric Burdet , Mark Ibberson , Thierry Pedrazzini

DOI: 10.1016/J.YJMCC.2015.09.013

关键词: GenomicsGenome-wide association studymicroRNABiologyBioinformaticsRNA-SeqGene regulatory networkLong non-coding RNA

摘要: … Other trans-acting cardiovascular lncRNAs have been … , endothelial cells and vascular smooth muscle cells during … the corresponding lncRNA might produce a phenotype solely …

参考文章(61)
GTEx Consortium, Kristin G Ardlie, David S Deluca, Ayellet V Segrè, Timothy J Sullivan, Taylor R Young, Ellen T Gelfand, Casandra A Trowbridge, Julian B Maller, Taru Tukiainen, Monkol Lek, Lucas D Ward, Pouya Kheradpour, Benjamin Iriarte, Yan Meng, Cameron D Palmer, Tõnu Esko, Wendy Winckler, Joel N Hirschhorn, Manolis Kellis, Daniel G MacArthur, Gad Getz, Andrey A Shabalin, Gen Li, Yi-Hui Zhou, Andrew B Nobel, Ivan Rusyn, Fred A Wright, Tuuli Lappalainen, Pedro G Ferreira, Halit Ongen, Manuel A Rivas, Alexis Battle, Sara Mostafavi, Jean Monlong, Michael Sammeth, Marta Mele, Ferran Reverter, Jakob M Goldmann, Daphne Koller, Roderic Guigó, Mark I McCarthy, Emmanouil T Dermitzakis, Eric R Gamazon, Hae Kyung Im, Anuar Konkashbaev, Dan L Nicolae, Nancy J Cox, Timothée Flutre, Xiaoquan Wen, Matthew Stephens, Jonathan K Pritchard, Zhidong Tu, Bin Zhang, Tao Huang, Quan Long, Luan Lin, Jialiang Yang, Jun Zhu, Jun Liu, Amanda Brown, Bernadette Mestichelli, Denee Tidwell, Edmund Lo, Mike Salvatore, Saboor Shad, Jeffrey A Thomas, John T Lonsdale, Michael T Moser, Bryan M Gillard, Ellen Karasik, Kimberly Ramsey, Christopher Choi, Barbara A Foster, John Syron, Johnell Fleming, Harold Magazine, Rick Hasz, Gary D Walters, Jason P Bridge, Mark Miklos, Susan Sullivan, Laura K Barker, Heather M Traino, Maghboeba Mosavel, Laura A Siminoff, Dana R Valley, Daniel C Rohrer, Scott D Jewell, Philip A Branton, Leslie H Sobin, Mary Barcus, Liqun Qi, Jeffrey McLean, Pushpa Hariharan, Ki Sung Um, Shenpei Wu, David Tabor, Charles Shive, Anna M Smith, Stephen A Buia, Anita H Undale, Karna L Robinson, Nancy Roche, Kimberly M Valentino, Angela Britton, Robin Burges, Debra Bradbury, Kenneth W Hambright, John Seleski, Greg E Korzeniewski, Kenyon Erickson, Yvonne Marcus, Jorge Tejada, Mehran Taherian, Chunrong Lu, Margaret Basile, Deborah C Mash, Simona Volpi, Jeffery P Struewing, Gary F Temple, Joy Boyer, Deborah Colantuoni, Roger Little, Susan Koester, Latarsha J Carithers, Helen M Moore, Ping Guan, Carolyn Compton, Sherilyn J Sawyer, Joanne P Demchok, Jimmie B Vaught, Chana A Rabiner, Nicole C Lockhart, Kristin G Ardlie, Gad Getz, Fred A Wright, Manolis Kellis, Simona Volpi, Emmanouil T Dermitzakis, None, The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans Science. ,vol. 348, pp. 648- 660 ,(2015) , 10.1126/SCIENCE.1262110
Enrique Blanco, Genís Parra, Roderic Guigó, Using geneid to identify genes. Current protocols in human genetics. ,vol. 64, ,(2003) , 10.1002/0471250953.BI0403S18
Pedro J. Batista, Howard Y. Chang, Long Noncoding RNAs: Cellular Address Codes in Development and Disease Cell. ,vol. 152, pp. 1298- 1307 ,(2013) , 10.1016/J.CELL.2013.02.012
Ci Chu, Kun Qu, Franklin L. Zhong, Steven E. Artandi, Howard Y. Chang, Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Molecular Cell. ,vol. 44, pp. 667- 678 ,(2011) , 10.1016/J.MOLCEL.2011.08.027
György Hutvágner, Martin J Simard, Craig C Mello, Phillip D Zamore, Sequence-specific inhibition of small RNA function PLOS Biology. ,vol. 2, ,(2004) , 10.1371/JOURNAL.PBIO.0020098
Oliver Zolk, Thomas F. Solbach, Thomas Eschenhagen, Alexander Weidemann, Martin F. Fromm, Activation of negative regulators of the hypoxia-inducible factor (HIF) pathway in human end-stage heart failure. Biochemical and Biophysical Research Communications. ,vol. 376, pp. 315- 320 ,(2008) , 10.1016/J.BBRC.2008.08.152
M. D. Simon, C. I. Wang, P. V. Kharchenko, J. A. West, B. A. Chapman, A. A. Alekseyenko, M. L. Borowsky, M. I. Kuroda, R. E. Kingston, The genomic binding sites of a noncoding RNA Proceedings of the National Academy of Sciences of the United States of America. ,vol. 108, pp. 20497- 20502 ,(2011) , 10.1073/PNAS.1113536108
Pei Han, Wei Li, Chiou-Hong Lin, Jin Yang, Ching Shang, Sylvia T. Nurnberg, Kevin Kai Jin, Weihong Xu, Chieh-Yu Lin, Chien-Jung Lin, Yiqin Xiong, Huan-Chieh Chien, Bin Zhou, Euan Ashley, Daniel Bernstein, Peng-Sheng Chen, Huei-Sheng Vincent Chen, Thomas Quertermous, Ching-Pin Chang, A long noncoding RNA protects the heart from pathological hypertrophy Nature. ,vol. 514, pp. 102- 106 ,(2014) , 10.1038/NATURE13596
Samir Ounzain, Thierry Pedrazzini, The promise of enhancer-associated long noncoding RNAs in cardiac regeneration Trends in Cardiovascular Medicine. ,vol. 25, pp. 592- 602 ,(2015) , 10.1016/J.TCM.2015.01.014
Mitchell Guttman, Manuel Garber, Joshua Z Levin, Julie Donaghey, James Robinson, Xian Adiconis, Lin Fan, Magdalena J Koziol, Andreas Gnirke, Chad Nusbaum, John L Rinn, Eric S Lander, Aviv Regev, Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs Nature Biotechnology. ,vol. 28, pp. 503- 510 ,(2010) , 10.1038/NBT.1633