An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales
作者： Phuong Le , Hemalatha Ramulu , Laurent Guijarro , Julien Paganini , Philippe Gouret
关键词: Horizontal gene transfer 、 Genomics 、 Biology 、 Ribosomal RNA 、 Phylogenetics 、 Rickettsiales 、 Bacterial genome size 、 Gene 、 Genome 、 Genetics
摘要: Background Horizontal gene transfer (HGT) is considered to be a major force driving the evolutionary history of prokaryotes. HGT widespread in prokaryotes, contributing genomic repertoire prokaryotic organisms, and particularly apparent Rickettsiales genomes. Gene gains from both distantly closely related organisms play crucial roles evolution bacterial In this work, we focus on genes transferred species into species.
biomedcentral.com
springer.com
doaj.org参考文章(92)
Philippe Gouret, Julien Paganini, Jacques Dainat, Dorra Louati, Elodie Darbo, Pierre Pontarotti, Anthony Levasseur, Integration of Evolutionary Biology Concepts for Functional Annotation and Automation of Complex Research in Evolution: The Multi-Agent Software System DAGOBAH Springer, Berlin, Heidelberg. pp. 71- 87 ,(2011) , 10.1007/978-3-642-20763-1_5
Berend Snel, Peer Bork, Martijn A. Huynen, Genome phylogeny based on gene content Nature Genetics. ,vol. 21, pp. 108- 110 ,(1999) , 10.1038/5052
Cort L Anderson, Timothy L Karr, Wolbachia: Evolutionary novelty in a rickettsial bacteria BMC Evolutionary Biology. ,vol. 1, pp. 10- 10 ,(2001) , 10.1186/1471-2148-1-10
J E Dawson, B E Anderson, D B Fishbein, J L Sanchez, C S Goldsmith, K H Wilson, C W Duntley, Isolation and characterization of an Ehrlichia sp. from a patient diagnosed with human ehrlichiosis. Journal of Clinical Microbiology. ,vol. 29, pp. 2741- 2745 ,(1991) , 10.1128/JCM.29.12.2741-2745.1991
Siv G. E. Andersson, Alireza Zomorodipour, Jan O. Andersson, Thomas Sicheritz-Pontén, U. Cecilia M. Alsmark, Raf M. Podowski, A. Kristina Näslund, Ann-Sofie Eriksson, Herbert H. Winkler, Charles G. Kurland, The genome sequence of Rickettsia prowazekii and the origin of mitochondria Nature. ,vol. 396, pp. 133- 140 ,(1998) , 10.1038/24094
Yan Cui, Mi Zhou, GeneInfoViz: constructing and visualizing gene relation networks. in Silico Biology. ,vol. 4, pp. 323- 333 ,(2004)
Shinji Masui, Satoru Kamoda, Tetsuhiko Sasaki, Hajime Ishikawa, Distribution and evolution of bacteriophage WO in Wolbachia, the endosymbiont causing sexual alterations in arthropods. Journal of Molecular Evolution. ,vol. 51, pp. 491- 497 ,(2000) , 10.1007/S002390010112
B E Anderson, J E Dawson, D C Jones, K H Wilson, Ehrlichia chaffeensis, a new species associated with human ehrlichiosis. Journal of Clinical Microbiology. ,vol. 29, pp. 2838- 2842 ,(1991) , 10.1128/JCM.29.12.2838-2842.1991
S M Chen, J S Dumler, J S Bakken, D H Walker, Identification of a granulocytotropic Ehrlichia species as the etiologic agent of human disease Journal of Clinical Microbiology. ,vol. 32, pp. 589- 595 ,(1994) , 10.1128/JCM.32.3.589-595.1994
A. TAMURA, N. OHASHI, H. URAKAMI, S. MIYAMURA, Classification of Rickettsia tsutsugamushi in a new genus, Orientia gen. nov., as Orientia tsutsugamushi comb. nov International Journal of Systematic and Evolutionary Microbiology. ,vol. 45, pp. 589- 591 ,(1995) , 10.1099/00207713-45-3-589