Micelle-catalyzed domain swapping in the GlpG rhomboid protease cytoplasmic domain.

作者: Houman Ghasriani , Jason K. C. Kwok , Allison R. Sherratt , Alexander C. Y. Foo , Tabussom Qureshi

DOI: 10.1021/BI500919V

关键词: BiophysicsRhomboid proteaseHydrolaseCrystallographyMicelleMonomerCircular dichroismDimerChemistryPhosphocholineProtein structure

摘要: Three-dimensional domain swapping is a mode of self-interaction that can give rise to altered functional states and has been identified as the trigger event in some protein deposition diseases, yet rates interconversion between oligomeric are usually slow, with requirement for transient disruption an extensive network interactions giving large kinetic barrier. Here we demonstrate cytoplasmic Escherichia coli GlpG rhomboid protease undergoes slow dimerization via micromolar concentrations micelles be used enhance monomer-dimer exchange by more than 1000-fold. Detergents bearing phosphocholine headgroup shown true catalysts, hexadecylphosphocholine reducing 26 kcal/mol free energy barrier >11 while preserving 5 difference monomer dimer states. Catalysis involves formation micelle-bound intermediate partially unfolded structure primed swapping. Taken together, these results first catalysis swapping, using work chaperonin-like fashion unfold kinetically trapped state allow access domain-swapped form.

参考文章(65)
Peter Güntert, Automated NMR structure calculation with CYANA. Methods of Molecular Biology. ,vol. 278, pp. 353- 378 ,(2004) , 10.1385/1-59259-809-9:353
R Piccoli, A Di Donato, G D'Alessio, Co-operativity in seminal ribonuclease function. Kinetic studies Biochemical Journal. ,vol. 253, pp. 329- 336 ,(1988) , 10.1042/BJ2530329
Iris Magler, Dorota Nüss, Michael Hauser, Fatima Ferreira, Hans Brandstetter, Molecular metamorphosis in polcalcin allergens by EF‐hand rearrangements and domain swapping FEBS Journal. ,vol. 277, pp. 2598- 2610 ,(2010) , 10.1111/J.1742-4658.2010.07671.X
Gabriel Cornilescu, Frank Delaglio, Ad Bax, Protein backbone angle restraints from searching a database for chemical shift and sequence homology Journal of Biomolecular NMR. ,vol. 13, pp. 289- 302 ,(1999) , 10.1023/A:1008392405740
Michael P Schlunegger, Melanie J Bennett, David Eisenberg, Oligomer Formation By 3D Domain Swapping: A Model For Protein Assembly And Misassembly Advances in Protein Chemistry. ,vol. 50, pp. 61- 122 ,(1997) , 10.1016/S0065-3233(08)60319-8
Karen J. Knaus, Manuel Morillas, Wieslaw Swietnicki, Michael Malone, Witold K. Surewicz, Vivien C. Yee, Crystal structure of the human prion protein reveals a mechanism for oligomerization Nature Structural & Molecular Biology. ,vol. 8, pp. 770- 774 ,(2002) , 10.1038/NSB0901-770
Robert Janowski, Maciej Kozak, Elzbieta Jankowska, Zbigniew Grzonka, Anders Grubb, Magnus Abrahamson, Mariusz Jaskolski, Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping. Nature Structural & Molecular Biology. ,vol. 8, pp. 316- 320 ,(2001) , 10.1038/86188
Alexander C. Y. Foo, Brandon G. R. Harvey, Jeff J. Metz, Natalie K. Goto, Influence of hydrophobic mismatch on the catalytic activity ofEscherichia coliGlpG rhomboid protease Protein Science. ,vol. 24, pp. 464- 473 ,(2015) , 10.1002/PRO.2585
Maria Wahlbom, Xin Wang, Veronica Lindström, Eric Carlemalm, Mariusz Jaskolski, Anders Grubb, Fibrillogenic oligomers of human cystatin C are formed by propagated domain swapping. Journal of Biological Chemistry. ,vol. 282, pp. 18318- 18326 ,(2007) , 10.1074/JBC.M611368200
Padmapriya Sampathkumar, Michelle W. Mak, Sarah J. Fischer-Witholt, Emmanuel Guigard, Cyril M. Kay, M. Joanne Lemieux, Oligomeric state study of prokaryotic rhomboid proteases Biochimica et Biophysica Acta (BBA) - Biomembranes. ,vol. 1818, pp. 3090- 3097 ,(2012) , 10.1016/J.BBAMEM.2012.08.004