Biological Pathways and Gene Networks Link Inflammation and Vascular Remodeling to Both Heart Failure with Preserved and Reduced Ejection Fraction in Women across Ethnicities

作者: Qing Liu , Kei Hang K Chan , Alan R Morrison , Stephen T McGarvey , Xi Luo

DOI: 10.1101/726208

关键词: Heart failureFramingham Heart StudyGenome-wide association studyLocus (genetics)Genetic associationEjection fractionBioinformaticsKEGGHuman leukocyte antigenMedicine

摘要: Abstract Introduction Heart failure (HF) is understudied among women; especially, genomic evidence implicating shared or unique mechanisms of HF with respect to reduced preserved ejection fraction (HFrEF, HFpEF) lacking across ethnic populations women. Prior genome-wide association studies (GWAS) have identified approximately 30 suggestive genetic variants for HF, although none been specifically linked HFrEF HFpEF. Objectives We aimed define, replicate, and annotate HFrEF, HFpEF, both, as well investigate potential biological underlying HFpEF African American (AA) European (EA) women in three well-characterized, high-quality prospective cohorts, the Women’s Health Initiative (WHI) study, Jackson Study (JHS), Framingham (FHS). Methods GWAS analysis on were first performed 7,982 AA 4,133 EA WHI, followed by pathway employing two independent methodological platforms (GSA-SNP Mergeomics) curating KEGG, Reactome, BioCarta databases. signals pathways using WHI replicated JHS FHS. For all pathways, we cross-phenotype cross-ethnicity validation analyses examine between phenotype-specific ethnicities. further prioritized key driver genes according specific identified. Results validated one previously reported locus six new ones, which was allocated five Additionally, defined discovered HFpEF-specific pathways. These overlapped main domains molecular signaling: 1) inflammation 2) vascular remodeling (including angiogenesis patterning), involving from collagen HLA gene families. Conclusions Our network large cohorts United States several novel loci its subtypes. In particular, reinforce mechanistic role development especially Given that therapeutic strategies developed left ventricular dysfunction had limited success targets this study should be assessed risk stratification design interventions.

参考文章(84)
Wayne D Rosamond, Patricia P. Chang, Chris Baggett, Anna Johnson, Alain G. Bertoni, Eyal Shahar, Anita Deswal, Gerardo Heiss, Lloyd E. Chambless, Classification of Heart Failure in the Atherosclerosis Risk in Communities (ARIC) Study: A Comparison of Diagnostic Criteria Circulation-heart Failure. ,vol. 5, pp. 152- 159 ,(2012) , 10.1161/CIRCHEARTFAILURE.111.963199
Peter L. Hordijk, Regulation of NADPH Oxidases: The Role of Rac Proteins Circulation Research. ,vol. 98, pp. 453- 462 ,(2006) , 10.1161/01.RES.0000204727.46710.5E
M. E. Lindsay, H. C. Dietz, The Genetic Basis of Aortic Aneurysm Cold Spring Harbor Perspectives in Medicine. ,vol. 4, ,(2014) , 10.1101/CSHPERSPECT.A015909
Holger Gerhardt, Matthew Golding, Marcus Fruttiger, Christiana Ruhrberg, Andrea Lundkvist, Alexandra Abramsson, Michael Jeltsch, Christopher Mitchell, Kari Alitalo, David Shima, Christer Betsholtz, VEGF guides angiogenic sprouting utilizing endothelial tip cell filopodia Journal of Cell Biology. ,vol. 161, pp. 1163- 1177 ,(2003) , 10.1083/JCB.200302047
Christiana Ruhrberg, Holger Gerhardt, Matthew Golding, Rose Watson, Sofia Ioannidou, Hajime Fujisawa, Christer Betsholtz, David T Shima, Spatially restricted patterning cues provided by heparin-binding VEGF-A control blood vessel branching morphogenesis Genes & Development. ,vol. 16, pp. 2684- 2698 ,(2002) , 10.1101/GAD.242002
Lawrence P. Kane, Virginia Smith Shapiro, David Stokoe, Arthur Weiss, Induction of NF-κB by the Akt/PKB kinase Current Biology. ,vol. 9, pp. 601- S1 ,(1999) , 10.1016/S0960-9822(99)80265-6
Nywana Sizemore, Stewart Leung, George R. Stark, Activation of Phosphatidylinositol 3-Kinase in Response to Interleukin-1 Leads to Phosphorylation and Activation of the NF-κB p65/RelA Subunit Molecular and Cellular Biology. ,vol. 19, pp. 4798- 4805 ,(1999) , 10.1128/MCB.19.7.4798
Clyde W Yancy, Mariell Jessup, Biykem Bozkurt, Javed Butler, Donald E Casey, Mark H Drazner, Gregg C Fonarow, Stephen A Geraci, Tamara Horwich, James L Januzzi, Maryl R Johnson, Edward K Kasper, Wayne C Levy, Frederick A Masoudi, Patrick E McBride, John JV McMurray, Judith E Mitchell, Pamela N Peterson, Barbara Riegel, Flora Sam, Lynne W Stevenson, WH Wilson Tang, Emily J Tsai, Bruce L Wilkoff, None, 2013 ACCF/AHA Guideline for the Management of Heart Failure: A Report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines Journal of the American College of Cardiology. ,vol. 62, pp. 1495- 1539 ,(2013) , 10.1016/J.JACC.2013.05.019
W Zhang, K Y Hui, A Gusev, N Warner, S M E Ng, J Ferguson, M Choi, A Burberry, C Abraham, L Mayer, R J Desnick, C J Cardinale, H Hakonarson, M Waterman, Y Chowers, A Karban, S R Brant, M S Silverberg, P K Gregersen, S Katz, R P Lifton, H Zhao, G Nuñez, I Pe'er, I Peter, J H Cho, Extended haplotype association study in Crohn's disease identifies a novel, Ashkenazi Jewish-specific missense mutation in the NF-κB pathway gene, HEATR3 Genes and Immunity. ,vol. 14, pp. 310- 316 ,(2013) , 10.1038/GENE.2013.19
I‐Ming Wang, Bin Zhang, Xia Yang, Jun Zhu, Serguei Stepaniants, Chunsheng Zhang, Qingying Meng, Mette Peters, Yudong He, Chester Ni, Deborah Slipetz, Michael A Crackower, Hani Houshyar, Christopher M Tan, Ernest Asante‐Appiah, Gary O'neill, Mingjuan Jane Luo, Rolf Thieringer, Jeffrey Yuan, Chi‐Sung Chiu, Pek Yee Lum, John Lamb, Yves Boie, Hilary A Wilkinson, Eric E Schadt, Hongyue Dai, Christopher Roberts, None, Systems analysis of eleven rodent disease models reveals an inflammatome signature and key drivers Molecular Systems Biology. ,vol. 8, pp. 594- 594 ,(2012) , 10.1038/MSB.2012.24