TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees
作者： Marina Marcet-Houben , Toni Gabaldón
DOI: 10.1093/NAR/GKR087
关键词: Network topology 、 Relevant information 、 Phylogenetic tree 、 Distance based 、 Biology 、 Trees (plant) 、 Gene duplication 、 Algorithm 、 Scope (computer science) 、 Tree (data structure)
摘要: … up the analysis of phylogenetic trees to genomic scales (1). A recurrent analysis in phylogenetic studies is the comparison of the topologies of two or more phylogenetic trees. This is …
oup.com
scienceopen.com
paperity.org
oxfordjournals.org参考文章(37)
Jacques D. Retief, Phylogenetic Analysis Using PHYLIP Methods of Molecular Biology. ,vol. 132, pp. 243- 258 ,(2000) , 10.1385/1-59259-192-2:243
Alona S. Russe, Computational biology : new research Nova Science Publishers. ,(2009)
Christopher J. Creevey, James O. McInerney, Trees from Trees: Construction of Phylogenetic Supertrees Using Clann Methods in Molecular Biology. ,vol. 537, pp. 139- 161 ,(2009) , 10.1007/978-1-59745-251-9_7
Gabriel Valiente, A Fast Algorithmic Technique for Comparing Large Phylogenetic Trees String Processing and Information Retrieval. pp. 370- 375 ,(2005) , 10.1007/11575832_41
Maxime Crochemore, Costas Iliopoulos, Marcin Kubica, Jakub Radoszewski, Wojciech Rytter, Tomasz Waleń, Extracting powers and periods in a string from its runs structure string processing and information retrieval. ,vol. 6393, pp. 258- 269 ,(2010) , 10.1007/978-3-642-16321-0_27
Joseph Felsenstein, Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods in Enzymology. ,vol. 266, pp. 418- 427 ,(1996) , 10.1016/S0076-6879(96)66026-1
Olaf R.P. Bininda-Emonds, Supertree Construction in the Genomic Age Methods in Enzymology. ,vol. 395, pp. 745- 757 ,(2005) , 10.1016/S0076-6879(05)95038-6
RobertG Beiko, Nicholas Hamilton, Phylogenetic identification of lateral genetic transfer events. BMC Evolutionary Biology. ,vol. 6, pp. 15- 15 ,(2006) , 10.1186/1471-2148-6-15
Jose Castresana, Topological variation in single-gene phylogenetic trees Genome Biology. ,vol. 8, pp. 216- 216 ,(2007) , 10.1186/GB-2007-8-6-216
J. Gordon Burleigh, Mukul S. Bansal, Oliver Eulenstein, Stefanie Hartmann, André Wehe, Todd J. Vision, Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees Systematic Biology. ,vol. 60, pp. 117- 125 ,(2011) , 10.1093/SYSBIO/SYQ072