Combining small molecules for cell reprogramming through an interatomic analysis.

作者: Bruno César Feltes , Diego Bonatto

DOI: 10.1039/C3MB70159J

关键词: SOX2Small moleculeStem cellKLF4Induced pluripotent stem cellComputational biologyCellBiologyReprogrammingNanotechnologyHomeobox protein NANOG

摘要: The knowledge available about the application and generation of induced pluripotent stem cells (iPSC) has grown since their discovery, new techniques to enhance reprogramming process have been described. Among approaches induce iPSC that gained great attention is use small molecules for reprogramming. molecules, unlike genetic manipulation, provides control through shifting concentrations combination different molecules. However, researchers reported "reprogramming cocktails" with variable results drug combinations. Thus, proper successful enhanced a matter discussion. testing all potential combinations in cell lineages very costly time-consuming. Therefore, this article, we discuss already employed generation, followed by systems chemo-biology tools create data sets protein-protein (PPI) chemical-protein (CPI) interaction networks based on used cocktail We further analyzed biological processes associated PPI-CPI provided protein targets be inhibited or expressed In addition, applied interference analysis prospective could negatively affect classical pluripotency-associated factors (SOX2, NANOG, KLF4 OCT4) thus potentially improve protocols.

参考文章(142)
Ping Yao, Jia-Qing Zhang, Xiao Zang, Ming-Tao He, Jia-Hui Cao, Hao Wu, Zu-Jian Liang, Huan-Tian Zhang, Zhen-Gang Zha, Apigenin accelerates lipopolysaccharide induced apoptosis in mesenchymal stem cells through suppressing vitamin D receptor expression. Chinese Medical Journal. ,vol. 124, pp. 3537- 3545 ,(2011)
Gustavo R. Rosania, Young-Tae Chang, Omar Perez, Daniel Sutherlin, Helin Dong, David J. Lockhart, Peter G. Schultz, Myoseverin, a microtubule-binding molecule with novel cellular effects Nature Biotechnology. ,vol. 18, pp. 304- 308 ,(2000) , 10.1038/73753
Eunsun Yoo, Laura A. Paganessi, Wasfia A. Alikhan, Elizabeth A. Paganessi, Frank Hughes, Henry C. Fung, Elizabeth Rich, Chu Myong Seong, Kent W. Christopherson nd, Loss of CD26 Protease Activity in Recipient Mice during Hematopoietic Stem Cell Transplantation Results in Improved Transplant Efficiency Transfusion. ,vol. 53, pp. 878- 887 ,(2013) , 10.1111/J.1537-2995.2012.03826.X
Taotao Chen, Li Shen, Jie Yu, Hongjiang Wan, Ao Guo, Jiekai Chen, Yuan Long, Jian Zhao, Gang Pei, Rapamycin and other longevity‐promoting compounds enhance the generation of mouse induced pluripotent stem cells Aging Cell. ,vol. 10, pp. 908- 911 ,(2011) , 10.1111/J.1474-9726.2011.00722.X
Mo Yang, Karen Li, Pak Cheung Ng, Carmen Ka Yee Chuen, Tze Kin Lau, Yuan Shan Cheng, Yuan Sheng Liu, Chi Kong Li, Patrick Man Pan Yuen, Anthony Edward James, Shuk Man Lee, Tai Fai Fok, Promoting effects of serotonin on hematopoiesis: ex vivo expansion of cord blood CD34+ stem/progenitor cells, proliferation of bone marrow stromal cells, and antiapoptosis. Stem Cells. ,vol. 25, pp. 1800- 1806 ,(2007) , 10.1634/STEMCELLS.2007-0048
Daniel E. Abbott, Caleb M. Bailey, Lynne-Marie Postovit, Elisabeth A. Seftor, Naira Margaryan, Richard E. B. Seftor, Mary J. C. Hendrix, The Epigenetic Influence of Tumor and Embryonic Microenvironments: How Different are They? Cancer Microenvironment. ,vol. 1, pp. 13- 21 ,(2008) , 10.1007/S12307-008-0004-5
Wenlin Li, HongYan Zhou, Ramzey Abujarour, Saiyong Zhu, Jin Young Joo, Tongxiang Lin, Ergeng Hao, Hans R. Schöler, Alberto Hayek, Sheng Ding, Generation of Human Induced Pluripotent Stem Cells in the Absence of Exogenous Sox2 Stem Cells. ,vol. 27, pp. 2992- 3000 ,(2009) , 10.1002/STEM.240
Junfen Jiang, Mei Zhao, Aiying Zhang, Mingfeng Yu, Xiaojuan Lin, Mingyuan Wu, Xiaonong Wang, Huili Lu, Shunying Zhu, Yan Yu, Zhenmin Mao, Wei Han, Characterization of a GSK-3 inhibitor in culture of human cord blood primitive hematopoietic cells Biomedicine & Pharmacotherapy. ,vol. 64, pp. 482- 486 ,(2010) , 10.1016/J.BIOPHA.2010.01.005
Naotake Funamizu, Curtis Ray Lacy, Kaori Fujita, Kenei Furukawa, Takeyuki Misawa, Katsuhiko Yanaga, Yoshinobu Manome, Tetrahydrouridine Inhibits Cell Proliferation through Cell Cycle Regulation Regardless of Cytidine Deaminase Expression Levels PLoS ONE. ,vol. 7, pp. e37424- ,(2012) , 10.1371/JOURNAL.PONE.0037424