Registration for Image-Based Transcriptomics: Parametric Signal Features and Multivariate Information Measures
作者： Rebecca Chen , Abhinav B. Das , Lav R. Varshney
DOI: 10.1101/521898
关键词: Multivariate statistics 、 Fluorescence 、 Component (UML) 、 Parametric statistics 、 Image registration 、 Signal 、 Image (mathematics) 、 Artificial intelligence 、 In situ hybridization 、 Sampling (statistics) 、 Computer science 、 Representation (mathematics) 、 Pattern recognition
摘要: Image-based transcriptomics involves determining spatial patterns in gene expression across cells and tissues. Image registration is a necessary component of data analysis pipelines that study levels different intracellular structures. We consider images from multiplexed single molecule fluorescent situ hybridization (smFISH) sequencing (ISS) datasets the Human Cell Atlas project demonstrate novel approach to groupwise image using parametric representation based on finite rate innovation sampling, together with practical optimization empirical multivariate information measures.
sci-hub.st 参考文章(33)
Paul A. Viola, Alignment by maximisation of mutual information pp. 16- 23 ,(1993)
Thomas Stoeger, Nico Battich, Markus D. Herrmann, Yauhen Yakimovich, Lucas Pelkmans, Computer vision for image-based transcriptomics. Methods. ,vol. 85, pp. 44- 53 ,(2015) , 10.1016/J.YMETH.2015.05.016
C. D. Kuglin, The phase correlation image alignment method Proc. IEEE International Conference on Cybernetics and Society, 1975. pp. 163- 165 ,(1975)
Edward Rosten, Tom Drummond, Machine learning for high-speed corner detection european conference on computer vision. pp. 430- 443 ,(2006) , 10.1007/11744023_34
J.P. Kern, M. Pattichis, S.D. Stearns, Registration of image cubes using multivariate mutual information asilomar conference on signals, systems and computers. ,vol. 2, pp. 1645- 1649 ,(2003) , 10.1109/ACSSC.2003.1292264
William Wells, Lilla Zollei, Eric Grimson, A unified information theoretic framework for pair- and group-wise registration of medical images Massachusetts Institute of Technology. ,(2006)
Qi Li, Isao Sato, Multimodality Image Registration by Particle Swarm Optimization of Mutual Information international conference on intelligent computing. ,vol. 4682, pp. 1120- 1130 ,(2009) , 10.1007/978-3-540-74205-0_116
Hans-Peter Kriegel, Martin Ester, Jörg Sander, Xiaowei Xu, A density-based algorithm for discovering clusters in large spatial Databases with Noise knowledge discovery and data mining. pp. 226- 231 ,(1996)
Alfonso Alba, Ruth M. Aguilar-Ponce, Javier Flavio Vigueras-Gómez, Edgar Arce-Santana, Phase correlation based image alignment with subpixel accuracy mexican international conference on artificial intelligence. pp. 171- 182 ,(2012) , 10.1007/978-3-642-37807-2_15
Nico Battich, Thomas Stoeger, Lucas Pelkmans, Image-based transcriptomics in thousands of single human cells at single-molecule resolution Nature Methods. ,vol. 10, pp. 1127- 1133 ,(2013) , 10.1038/NMETH.2657