Genomic profiling reveals extensive heterogeneity in somatic DNA copy number aberrations of canine hemangiosarcoma

作者: Rachael Thomas , Luke Borst , Daniel Rotroff , Alison Motsinger-Reif , Kerstin Lindblad-Toh

DOI: 10.1007/S10577-014-9406-Z

关键词: BiologyGenetic heterogeneityComparative genomic hybridizationGene expression profilingGeneticsGene duplicationChromosome 16Canine HemangiosarcomaHemangiosarcomaCDKN2A

摘要: Canine hemangiosarcoma is a highly aggressive vascular neoplasm associated with extensive clinical and anatomical heterogeneity grave prognosis. Comprehensive molecular characterization of may identify novel therapeutic targets advanced management strategies, but there are no published reports tumor-associated genome instability disrupted gene dosage in this cancer. We performed genome-wide microarray-based somatic DNA copy number profiling 75 primary intra-abdominal hemangiosarcomas from five popular dog breeds that predisposed to disease. The cohort exhibited limited global genomic instability, compared other canine sarcomas studied date, aberrations (CNAs) were predominantly low amplitude. Recurrent imbalances several key cancer-associated genes evident; however, the penetrance any single CNA was distinct hallmark evident. Copy gains chromosomes 13, 24, 31, loss chromosome 16, most recurrent CNAs involving large regions, their relative distribution within between cases suggests they likely represent passenger aberrations. CDKN2A, VEGFA, SKI oncogene identified as potential driver development, highlighting for modulation. profiles broadly conserved breeds, although subregional variation evident, including near twofold lower incidence VEGFA gain Golden Retrievers versus (22 40 %). These observations support prior transcriptional studies suggesting cancer reflect existence multiple, molecularly subtypes hemangiosarcoma.

参考文章(54)
M. Teresa, Melin Tan, Mark Tarango, Lou Fink, Martin Mihm, Yupo Ma, Milton Waner, Differential Expression of SKI Oncogene Protein in Hemangiomas Otolaryngology-Head and Neck Surgery. ,vol. 141, pp. 213- 218 ,(2009) , 10.1016/J.OTOHNS.2009.05.005
Sarah L. Thompson, Duane A. Compton, Chromosomes and cancer cells. Chromosome Research. ,vol. 19, pp. 433- 444 ,(2011) , 10.1007/S10577-010-9179-Y
Rachael Thomas, Shannon E. Duke, Huixia J. Wang, Tessa E. Breen, Robert J. Higgins, Keith E. Linder, Peter Ellis, Cordelia F. Langford, Peter J. Dickinson, Natasha J. Olby, Matthew Breen, 'Putting our heads together': insights into genomic conservation between human and canine intracranial tumors. Journal of Neuro-oncology. ,vol. 94, pp. 333- 349 ,(2009) , 10.1007/S11060-009-9877-5
Guy Lahat, Asha R. Dhuka, Hen Hallevi, Lianchun Xiao, Changye Zou, Kerrington D. Smith, Thuy L. Phung, Raphael E. Pollock, Robert Benjamin, Kelly K. Hunt, Alexander J. Lazar, Dina Lev, Angiosarcoma: clinical and molecular insights. Annals of Surgery. ,vol. 251, pp. 1098- 1106 ,(2010) , 10.1097/SLA.0B013E3181DBB75A
Antoine Italiano, Rachael Thomas, Matthew Breen, Lei Zhang, Aimee M. Crago, Samuel Singer, Raya Khanin, Robert G. Maki, Aleksandra Mihailovic, Markus Hafner, Tom Tuschl, Cristina R. Antonescu, The miR-17-92 Cluster and Its Target THBS1 Are Differentially Expressed in Angiosarcomas Dependent on MYC Amplification Genes, Chromosomes and Cancer. ,vol. 51, pp. 569- 578 ,(2012) , 10.1002/GCC.21943
Antoine Italiano, Chun-Liang Chen, Rachael Thomas, Matthew Breen, Françoise Bonnet, Nicolas Sevenet, Michel Longy, Robert G. Maki, Jean-Michel Coindre, Cristina R. Antonescu, Alterations of the p53 and PIK3CA/AKT/mTOR pathways in angiosarcomas: a pattern distinct from other sarcomas with complex genomics. Cancer. ,vol. 118, pp. 5878- 5887 ,(2012) , 10.1002/CNCR.27614
Pipsa Saharinen, Lauri Eklund, Kristina Pulkki, Petri Bono, Kari Alitalo, VEGF and angiopoietin signaling in tumor angiogenesis and metastasis Trends in Molecular Medicine. ,vol. 17, pp. 347- 362 ,(2011) , 10.1016/J.MOLMED.2011.01.015
Oscar Krijgsman, Danielle Israeli, Josien C. Haan, Hendrik F. van Essen, Serge J. Smeets, Paul P. Eijk, Renske D. M. Steenbergen, Klaas Kok, Sabine Tejpar, Gerrit A. Meijer, Bauke Ylstra, CGH arrays compared for DNA isolated from formalin-fixed, paraffin-embedded material Genes, Chromosomes and Cancer. ,vol. 51, pp. 344- 352 ,(2012) , 10.1002/GCC.21920