When Long Noncoding RNAs Meet Genome Editing in Pluripotent Stem Cells.

作者: Fuquan Chen , Jiaojiao Ji , Jian Shen , Xinyi Lu

DOI: 10.1155/2017/3250624

关键词: Dosage compensationRNA splicingTranscriptional regulationGenome editingHuman genomeGeneticsImprinting (psychology)Induced pluripotent stem cellBiologyGene

摘要: Most of the human genome can be transcribed into RNAs, but only a minority these regions produce protein-coding mRNAs whereas remaining are noncoding RNAs. Long RNAs (lncRNAs) were known for their influential regulatory roles in multiple biological processes such as imprinting, dosage compensation, transcriptional regulation, and splicing. The physiological functions genes have been extensively characterized through editing pluripotent stem cells (PSCs) past 30 years; however, study lncRNAs with technologies came attentions recent years. Here, we summarize advancements dissecting PSCs highlight potential tools useful examining PSCs.

参考文章(120)
Hiroyuki Niida, Takehisa Matsumoto, Hideo Satoh, Mieko Shiwa, Yoshiki Tokutake, Yasuhiro Furuichi, Yoichi Shinkai, Severe growth defect in mouse cells lacking the telomerase RNA component. Nature Genetics. ,vol. 19, pp. 203- 206 ,(1998) , 10.1038/580
David M Shechner, Ezgi Hacisuleyman, Scott T Younger, John L Rinn, Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display Nature Methods. ,vol. 12, pp. 664- 670 ,(2015) , 10.1038/NMETH.3433
Philippe Soriano, Generalized lacZ expression with the ROSA26 Cre reporter strain Nature Genetics. ,vol. 21, pp. 70- 71 ,(1999) , 10.1038/5007
Xuefeng Liu, Dan Li, Weimin Zhang, Mingzhou Guo, Qimin Zhan, Long non-coding RNA gadd7 interacts with TDP-43 and regulates Cdk6 mRNA decay. The EMBO Journal. ,vol. 31, pp. 4415- 4427 ,(2012) , 10.1038/EMBOJ.2012.292
Estel Aparicio-Prat, Carme Arnan, Ilaria Sala, Núria Bosch, Roderic Guigó, Rory Johnson, DECKO: Single-oligo, dual-CRISPR deletion of genomic elements including long non-coding RNAs BMC Genomics. ,vol. 16, pp. 846- 846 ,(2015) , 10.1186/S12864-015-2086-Z
Je-Hyun Yoon, Kotb Abdelmohsen, Subramanya Srikantan, Xiaoling Yang, Jennifer L. Martindale, Supriyo De, Maite Huarte, Ming Zhan, Kevin G. Becker, Myriam Gorospe, LincRNA-p21 Suppresses Target mRNA Translation Molecular Cell. ,vol. 47, pp. 648- 655 ,(2012) , 10.1016/J.MOLCEL.2012.06.027
Frank Sleutels, Ronald Zwart, Denise P. Barlow, The non-coding Air RNA is required for silencing autosomal imprinted genes Nature. ,vol. 415, pp. 810- 813 ,(2002) , 10.1038/415810A
Sabine Loewer, Moran N Cabili, Mitchell Guttman, Yuin-Han Loh, Kelly Thomas, In Hyun Park, Manuel Garber, Matthew Curran, Tamer Onder, Suneet Agarwal, Philip D Manos, Sumon Datta, Eric S Lander, Thorsten M Schlaeger, George Q Daley, John L Rinn, Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells Nature Genetics. ,vol. 42, pp. 1113- 1117 ,(2010) , 10.1038/NG.710
Tomohiro Kono, Yayoi Obata, Quiong Wu, Katsutoshi Niwa, Yukiko Ono, Yuji Yamamoto, Eun Sung Park, Jeong-Sun Seo, Hidehiko Ogawa, Birth of parthenogenetic mice that can develop to adulthood Nature. ,vol. 428, pp. 860- 864 ,(2004) , 10.1038/NATURE02402