Production of Fatty Acid-derived valuable chemicals in synthetic microbes

作者: Ai-Qun Yu , Nina Kurniasih Pratomo Juwono , Susanna Su Jan Leong , Matthew Wook Chang

DOI: 10.3389/FBIOE.2014.00078

关键词: Mrna secondary structureMetabolic engineeringYeastBiologyFatty acid derivativesBiochemistryGene CircuitsFatty acidMicroorganismSynthetic biologyBiotechnology

摘要: Fatty acid derivatives, such as hydroxy fatty acids, alcohols, methyl/ethyl esters, and alka(e)nes, have a wide range of industrial applications including plastics, lubricants, fuels. Currently, these chemicals are obtained mainly through chemical synthesis, which is complex costly, their availability from natural biological sources extremely limited. Metabolic engineering microorganisms has provided platform for effective production valuable biochemicals. Notably, synthetic biology-based metabolic strategies been extensively applied to refactor improved biochemical production. Here, we reviewed: (i) the current status microbes that produce acid-derived chemicals, (ii) recent progress biology approaches assist engineering, mRNA secondary structure sensor-regulator system, regulatable expression ultrasensitive input/output control computer science-based design gene circuits. Furthermore, key challenges were discussed. Finally, concluded provides useful economically viable in engineered microbes.

参考文章(125)
Yves Waché, Production of Dicarboxylic Acids and Flagrances by Yarrowia lipolytica Springer, Berlin, Heidelberg. pp. 151- 170 ,(2013) , 10.1007/978-3-642-38583-4_6
C. Ratledge, Yeasts, moulds, algae and bacteria as sources of lipids Technological Advances in Improved and Alternative Sources of Lipids. pp. 235- 291 ,(1994) , 10.1007/978-1-4615-2109-9_9
Howard M. Salis, The ribosome binding site calculator. Methods in Enzymology. ,vol. 498, pp. 19- 42 ,(2011) , 10.1016/B978-0-12-385120-8.00002-4
James M. Clomburg, Ramon Gonzalez, Biofuel production in Escherichia coli: the role of metabolic engineering and synthetic biology. Applied Microbiology and Biotechnology. ,vol. 86, pp. 419- 434 ,(2010) , 10.1007/S00253-010-2446-1
T. P. Howard, S. Middelhaufe, K. Moore, C. Edner, D. M. Kolak, G. N. Taylor, D. A. Parker, R. Lee, N. Smirnoff, S. J. Aves, J. Love, Synthesis of customized petroleum-replica fuel molecules by targeted modification of free fatty acid pools in Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. ,vol. 110, pp. 7636- 7641 ,(2013) , 10.1073/PNAS.1215966110
Zengyi Shao, Hua Zhao, Huimin Zhao, DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways Nucleic Acids Research. ,vol. 37, ,(2009) , 10.1093/NAR/GKN991
Lin Zhang, Guoping Zhao, Xiaoming Ding, Tandem assembly of the epothilone biosynthetic gene cluster by in vitro site-specific recombination Scientific Reports. ,vol. 1, pp. 141- 141 ,(2011) , 10.1038/SREP00141
A. Beopoulos, J. Verbeke, F. Bordes, M. Guicherd, M. Bressy, A. Marty, Jean-Marc Nicaud, Metabolic engineering for ricinoleic acid production in the oleaginous yeast Yarrowia lipolytica. Applied Microbiology and Biotechnology. ,vol. 98, pp. 251- 262 ,(2014) , 10.1007/S00253-013-5295-X
Daniel G Gibson, Lei Young, Ray-Yuan Chuang, J Craig Venter, Clyde A Hutchison, Hamilton O Smith, Enzymatic assembly of DNA molecules up to several hundred kilobases Nature Methods. ,vol. 6, pp. 343- 345 ,(2009) , 10.1038/NMETH.1318
Wei-Hua Chen, Zhong-Jun Qin, Jin Wang, Guo-Ping Zhao, The MASTER (methylation-assisted tailorable ends rational) ligation method for seamless DNA assembly Nucleic Acids Research. ,vol. 41, ,(2013) , 10.1093/NAR/GKT122