Understanding Vegetative Desiccation Tolerance Using Integrated Functional Genomics Approaches Within a Comparative Evolutionary Framework

作者: John C. Cushman , Melvin J. Oliver

DOI: 10.1007/978-3-642-19106-0_15

关键词: MetabolomicsFunctional genomicsComputational biologyMetabolomeBotanyMassively parallel signature sequencingDesiccationProteomeTranscriptomeDesiccation toleranceBiology

摘要: Desiccation tolerance (DT) is defined as the equilibration of protoplasmic water potential with that surrounding air (generally dry) without loss viability upon rehydration. Vegetative DT widespread among mosses and lichens, but relatively rare in vascular plants (0.15%). Recent studies selected resurrection species indicate while might have evolved unique adaptive proteins, enzymes, antioxidants, molecular genetic basis lies orchestration transcriptional posttranscriptional regulatory programs operate during drying requires signaling pathways mechanisms, aspects which resemble developmental present orthodox seeds, result accumulation oligosaccharides, stress reactive oxygen scavenging well alterations composition structure membrane lipids. Functional genomics using transcriptome, proteome, metabolome analyses are just beginning to unravel system complexity required orchestrate metabolic symphony DT. The status current gene discovery efforts summarized along major transcriptome technologies available currently conduct desiccation sensitive versus tolerant comparisons. These strategies, integrated large-scale proteomic metabolomic investigations progress, promise revolutionize our understanding mechanistic plants.

参考文章(191)
Yutaka Sashida, Kazunori Ogawa, Tsuyoshi Yamanouchi, Hiroyuki Tanaka, Yukihiro Shoyama, Itsuo Nishioka, Triterpenoids from callus tissue of Actinidia polygama Phytochemistry. ,vol. 35, pp. 377- 380 ,(1994) , 10.1016/S0031-9422(00)94767-8
John P. Moore, George G. Lindsey, Jill M. Farrant, Wolf F. Brandt, An overview of the biology of the desiccation-tolerant resurrection plant Myrothamnus flabellifolia. Annals of Botany. ,vol. 99, pp. 211- 217 ,(2007) , 10.1093/AOB/MCL269
Marnik Vuylsteke, Johan D Peleman, Michiel JT van Eijk, AFLP-based transcript profiling (cDNA-AFLP) for genome-wide expression analysis. Nature Protocols. ,vol. 2, pp. 1399- 1413 ,(2007) , 10.1038/NPROT.2007.174
A. J. Wood, R. J. Duff, M. J. Oliver, Expressed sequence tags (ESTs) from desiccated Tortula ruralis identify a large number of novel plant genes. Plant and Cell Physiology. ,vol. 40, pp. 361- 368 ,(1999) , 10.1093/OXFORDJOURNALS.PCP.A029551
Kazuo Nakashima, Yasunari Fujita, Norihito Kanamori, Takeshi Katagiri, Taishi Umezawa, Satoshi Kidokoro, Kyonoshin Maruyama, Takuya Yoshida, Kanako Ishiyama, Masatomo Kobayashi, Kazuo Shinozaki, Kazuko Yamaguchi-Shinozaki, Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy Plant and Cell Physiology. ,vol. 50, pp. 1345- 1363 ,(2009) , 10.1093/PCP/PCP083
M.-S. Liu, C.-T. Chien, T.-P. Lin, Constitutive Components and Induced Gene Expression are Involved in the Desiccation Tolerance of Selaginella tamariscina Plant and Cell Physiology. ,vol. 49, pp. 653- 663 ,(2008) , 10.1093/PCP/PCN040
Michael C. F. Proctor, Roberto Ligrone, Jeffrey G. Duckett, Desiccation Tolerance in the Moss Polytrichum formosum: Physiological and Fine-structural Changes during Desiccation and Recovery Annals of Botany. ,vol. 99, pp. 75- 93 ,(2007) , 10.1093/AOB/MCL246