Next-generation gap
作者： John D McPherson
DOI: 10.1038/NMETH.F.268
关键词: Computer science 、 Analysis tools 、 Generation gap 、 Process (engineering) 、 Bioinformatics 、 Massive parallel sequencing 、 Base calling 、 Bridging (programming) 、 Data science 、 Software 、 Documentation
摘要: There is a growing gap between the generation of massively parallel sequencing output and the ability to process and analyze the resulting data. New users are left to navigate a …
nature.com
elsevier.com
researchgate.net 
sci-hub.se 参考文章(31)
Eugene W Myers, Granger G Sutton, Art L Delcher, Ian M Dew, Dan P Fasulo, Michael J Flanigan, Saul A Kravitz, Clark M Mobarry, Knut HJ Reinert, Karin A Remington, Eric L Anson, Randall A Bolanos, Hui-Hsien Chou, Catherine M Jordan, Aaron L Halpern, Stefano Lonardi, Ellen M Beasley, Rhonda C Brandon, Lin Chen, Patrick J Dunn, Zhongwu Lai, Yong Liang, Deborah R Nusskern, Ming Zhan, Qing Zhang, Xiangqun Zheng, Gerald M Rubin, Mark D Adams, J Craig Venter, None, A Whole-Genome Assembly of Drosophila Science. ,vol. 287, pp. 2196- 2204 ,(2000) , 10.1126/SCIENCE.287.5461.2196
Robert A Edwards, Beltran Rodriguez-Brito, Linda Wegley, Matthew Haynes, Mya Breitbart, Dean M Peterson, Martin O Saar, Scott Alexander, E Calvin Alexander, Forest Rohwer, Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics. ,vol. 7, pp. 57- 57 ,(2006) , 10.1186/1471-2164-7-57
J. T. Simpson, K. Wong, S. D. Jackman, J. E. Schein, S. J.M. Jones, I. Birol, ABySS: A parallel assembler for short read sequence data Genome Research. ,vol. 19, pp. 1117- 1123 ,(2009) , 10.1101/GR.089532.108
Lloyd M. Smith, Jane Z. Sanders, Robert J. Kaiser, Peter Hughes, Chris Dodd, Charles R. Connell, Cheryl Heiner, Stephen B. H. Kent, Leroy E. Hood, Fluorescence detection in automated DNA sequence analysis Nature. ,vol. 321, pp. 674- 679 ,(1986) , 10.1038/321674A0
John D McPherson, Marco Marra, LaDeana Hillier, Robert H Waterston, Asif Chinwalla, John Wallis, Mandeep Sekhon, Kristine Wylie, Elaine R Mardis, Richard K Wilson, Robert Fulton, Tamara A Kucaba, Caryn Wagner-McPherson, William B Barbazuk, Simon G Gregory, Sean J Humphray, Lisa French, Richard S Evans, Graeme Bethel, Adam Whittaker, Jane L Holden, Owen T McCann, Andrew Dunham, Carol Soderlund, Carol E Scott, David R Bentley, Gregory Schuler, Hsiu-Chuan Chen, Wonhee Jang, Eric D Green, Jacquelyn R Idol, Valerie V Braden Maduro, Kate T Montgomery, Eunice Lee, Ashley Miller, Suzanne Emerling, Raju Kucherlapati, Richard Gibbs, Steve Scherer, J Harley Gorrell, Erica Sodergren, Kerstin Clerc-Blankenburg, Paul Tabor, Susan Naylor, Dawn Garcia, Pieter J de Jong, Joseph J Catanese, Norma Nowak, Kazutoyo Osoegawa, Shizhen Qin, Lee Rowen, Anuradha Madan, Monica Dors, Leroy Hood, Barbara Trask, Cynthia Friedman, Hillary Massa, Vivian G Cheung, Ilan R Kirsch, Thomas Reid, Raluca Yonescu, Jean Weissenbach, Thomas Bruls, Roland Heilig, Elbert Branscomb, Anne Olsen, Norman Doggett, Jan-Fang Cheng, Trevor Hawkins, Richard M Myers, Jin Shang, Lucia Ramirez, Jeremy Schmutz, Olivia Velasquez, Kami Dixon, Nancy E Stone, David R Cox, David Haussler, W James Kent, Terrence Furey, Sanja Rogic, Scot Kennedy, Steven Jones, André Rosenthal, Gaiping Wen, Markus Schilhabel, Gernot Gloeckner, Gerald Nyakatura, Reiner Siebert, Brigitte Schlegelberger, Julie Korenberg, Xiao-Ning Chen, Asao Fujiyama, Masahira Hattori, Atsushi Toyoda, Tetsushi Yada, Hong-Seok Park, Yoshiyuki Sakaki, Nobuyoshi Shimizu, Shuichi Asakawa, Kazuhiko Kawasaki, Takashi Sasaki, Ai Shintani, Atsushi Shimizu, Kazunori Shibuya, Jun Kudoh, Shinsei Minoshima, Juliane Ramser, Peter Seranski, Celine Hoff, Annemarie Poustka, Richard Reinhardt, Hans Lehrach, A physical map of the human genome. Nature. ,vol. 409, pp. 934- 941 ,(2001) , 10.1038/35057157
Angélique Girard, Ravi Sachidanandam, Gregory J. Hannon, Michelle A. Carmell, A germline-specific class of small RNAs binds mammalian Piwi proteins Nature. ,vol. 442, pp. 199- 202 ,(2006) , 10.1038/NATURE04917
Daniel J. Turner, Thomas M. Keane, Ian Sudbery, David J. Adams, Next-generation sequencing of vertebrate experimental organisms Mammalian Genome. ,vol. 20, pp. 327- 338 ,(2009) , 10.1007/S00335-009-9187-4
V. E. Velculescu, L. Zhang, B. Vogelstein, K. W. Kinzler, Serial analysis of gene expression Science. ,vol. 270, pp. 484- 487 ,(2000) , 10.1126/SCIENCE.270.5235.484
Chao Xie, Martti T Tammi, CNV-seq, a new method to detect copy number variation using high-throughput sequencing. BMC Bioinformatics. ,vol. 10, pp. 80- 80 ,(2009) , 10.1186/1471-2105-10-80
Paul Flicek, Ewan Birney, Sense from sequence reads: methods for alignment and assembly Nature Methods. ,vol. 6, pp. 479- ,(2009) , 10.1038/NMETH.1376