RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1

作者: John R Prensner , Shuang Zhao , Nicholas Erho , Matthew Schipper , Matthew K Iyer

DOI: 10.1016/S1470-2045(14)71113-1

关键词: Internal medicineMedicineRetrospective cohort studyProstatectomyClinical endpointSurvival rateCase-control studyOncologyMetastasisProstate cancerProstate-specific antigenBioinformatics

摘要: … Therefore, we undertook an unbiased analysis to identify RNA biomarkers associated with … biomarker discovery analysis according to REMARK criteria 17 to identify RNA biomarkers …

参考文章(62)
Jack Cuzick, Prognostic value of a cell cycle progression score for men with prostate cancer. Recent results in cancer research. ,vol. 202, pp. 133- 140 ,(2014) , 10.1007/978-3-642-45195-9_16
Joost L. Boormans, Hanneke Korsten, Angelique J.C. Ziel-van der Made, Geert J.L.H. van Leenders, Carola V. de Vos, Guido Jenster, Jan Trapman, Identification of TDRD1 as a direct target gene of ERG in primary prostate cancer. International Journal of Cancer. ,vol. 133, pp. 335- 345 ,(2013) , 10.1002/IJC.28025
Margaret Gardiner-Garden, Daniel E. H. Afar, James G. Kench, Susan M. Henshall, Howard I. Scher, Dorian Willhite, Krishan K. Rasiah, John J. Grygiel, Kurt Gish, David B. Agus, Phillip D. Stricker, Robert L. Sutherland, David I. Quinn, Lisa G. Horvath, David H. Mack, Jordan Hiller, Survival analysis of genome-wide gene expression profiles of prostate cancers identifies new prognostic targets of disease relapse. Cancer Research. ,vol. 63, pp. 4196- 4203 ,(2003)
Ketan Badani, Darby J. S. Thompson, Christine Buerki, Elai Davicioni, Jill Garrison, Mercedeh Ghadessi, Anirban P. Mitra, Penelope J. Wood, John Hornberger, Impact of a genomic classifier of metastatic risk on postoperative treatment recommendations for prostate cancer patients: a report from the DECIDE study group Oncotarget. ,vol. 4, pp. 600- 609 ,(2013) , 10.18632/ONCOTARGET.918
Kyung Park, Scott A. Tomlins, Kumaran M. Mudaliar, Ya-Lin Chiu, Raquel Esgueva, Rohit Mehra, Khalid Suleman, Sooryanarayana Varambally, John C. Brenner, Theresa MacDonald, Abhishek Srivastava, Ashutosh K. Tewari, Ubaradka Sathyanarayana, Dea Nagy, Gary Pestano, Lakshmi P. Kunju, Francesca Demichelis, Arul M. Chinnaiyan, Mark A. Rubin, Antibody-based detection of ERG rearrangement-positive prostate cancer. Neoplasia. ,vol. 12, pp. 590- 598 ,(2010) , 10.1593/NEO.10726
R. Jeffrey Karnes, Eric J. Bergstralh, Elai Davicioni, Mercedeh Ghadessi, Christine Buerki, Anirban P. Mitra, Anamaria Crisan, Nicholas Erho, Ismael A. Vergara, Lucia L. Lam, Rachel Carlson, Darby J.S. Thompson, Zaid Haddad, Benedikt Zimmermann, Thomas Sierocinski, Timothy J. Triche, Thomas Kollmeyer, Karla V. Ballman, Peter C. Black, George G. Klee, Robert B. Jenkins, Validation of a Genomic Classifier that Predicts Metastasis Following Radical Prostatectomy in an At Risk Patient Population Journal of Urology. ,vol. 190, pp. 2047- 2053 ,(2013) , 10.1016/J.JURO.2013.06.017
John R Prensner, Matthew K Iyer, Anirban Sahu, Irfan A Asangani, Qi Cao, Lalit Patel, Ismael A Vergara, Elai Davicioni, Nicholas Erho, Mercedeh Ghadessi, Robert B Jenkins, Timothy J Triche, Rohit Malik, Rachel Bedenis, Natalie McGregor, Teng Ma, Wei Chen, Sumin Han, Xiaojun Jing, Xuhong Cao, Xiaoju Wang, Benjamin Chandler, Wei Yan, Javed Siddiqui, Lakshmi P Kunju, Saravana M Dhanasekaran, Kenneth J Pienta, Felix Y Feng, Arul M Chinnaiyan, The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex Nature Genetics. ,vol. 45, pp. 1392- 1403 ,(2013) , 10.1038/NG.2771
Simpa S. Salami, Folke Schmidt, Bharathi Laxman, Meredith M. Regan, David S. Rickman, Douglas Scherr, Gerardina Bueti, Javed Siddiqui, Scott A. Tomlins, John T. Wei, Arul M. Chinnaiyan, Mark A. Rubin, Martin G. Sanda, Combining urinary detection of TMPRSS2:ERG and PCA3 with serum PSA to predict diagnosis of prostate cancer Urologic Oncology: Seminars and Original Investigations. ,vol. 31, pp. 566- 571 ,(2013) , 10.1016/J.UROLONC.2011.04.001
Shanker Kalyana-Sundaram, Chandan Kumar-Sinha, Sunita Shankar, Dan R Robinson, Yi-Mi Wu, Xuhong Cao, Irfan A Asangani, Vishal Kothari, John R Prensner, Robert J Lonigro, Matthew K Iyer, Terrence Barrette, Achiraman Shanmugam, Saravana M Dhanasekaran, Nallasivam Palanisamy, Arul M Chinnaiyan, None, Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers Cell. ,vol. 149, pp. 1622- 1634 ,(2012) , 10.1016/J.CELL.2012.04.041
Rohit Mehra, Scott A Tomlins, Ronglai Shen, Owais Nadeem, Lei Wang, John T Wei, Kenneth J Pienta, Debashis Ghosh, Mark A Rubin, Arul M Chinnaiyan, Rajal B Shah, Comprehensive assessment of TMPRSS2 and ETS family gene aberrations in clinically localized prostate cancer Modern Pathology. ,vol. 20, pp. 538- 544 ,(2007) , 10.1038/MODPATHOL.3800769