Inferring local movement of pathogen vectors among hosts

作者: W. E. Snyder , Z Fu , B Epstein , J. L. Kelley , Q. Zheng

DOI: 10.1101/046540

关键词: EcologyBiological dispersalBactericera cockerelliVector (epidemiology)Zebra chipGrowing seasonGenomeInsectBiologyHerbivore

摘要: Herbivores often move among spatially interspersed host plants, tracking high-quality resources through space and time. This dispersal is of particular interest for vectors plant pathogens. Existing molecular tools to track such movement have yielded important insights, but provide insufficient genetic resolution infer spread at finer spatiotemporal scales. Here, we explore the use Nextera-tagmented reductively-amplified DNA (NextRAD) sequencing a highly-mobile winged insect, potato psyllid (Bactericera cockerelli), plants. The pathogen that causes zebra chip disease in (Solanum tuberosum), understanding managing this limited by uncertainty about insect′s plant(s) outside growing season. We identified 8,443 polymorphic loci psyllids separated spatiotemporally on or patches bittersweet nightshade (S. dulcumara), weedy proposed be source potato-colonizing psyllids. A subset exhibited close similarity insects nightshade, consistent with regular between these two However, second potato-collected was genetically distinct from those collected nightshade; suggests currently unrecognized host-plant species could contributing populations potato. Oftentimes, animal pathogens must tracked relatively fine scale order understand, predict, manage spread. demonstrate emerging technologies detect SNPs across vector′s entire genome can used localized movement.

参考文章(80)
Michael A. Russello, Matthew D. Waterhouse, Paul D. Etter, Eric A. Johnson, From promise to practice: pairing non-invasive sampling with genomics in conservation. PeerJ. ,vol. 3, ,(2015) , 10.7717/PEERJ.1106
Paul A Hohenlohe, Stephen J Amish, Julian M Catchen, Fred W Allendorf, Gordon Luikart, None, Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout. Molecular Ecology Resources. ,vol. 11, pp. 117- 122 ,(2011) , 10.1111/J.1755-0998.2010.02967.X
Zhian N. Kamvar, Jonah C. Brooks, Niklaus J. Grünwald, Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality. Frontiers in Genetics. ,vol. 6, pp. 208- 208 ,(2015) , 10.3389/FGENE.2015.00208
Patrick G. Meirmans, Seven common mistakes in population genetics and how to avoid them Molecular Ecology. ,vol. 24, pp. 3223- 3231 ,(2015) , 10.1111/MEC.13243
Wesley A. Larson, Fred M. Utter, Katherine W. Myers, William D. Templin, James E. Seeb, Charles M. Guthrie III, Alexander V. Bugaev, Lisa W. Seeb, Single-nucleotide polymorphisms reveal distribution and migration of Chinook salmon (Oncorhynchus tshawytscha) in the Bering Sea and North Pacific Ocean Canadian Journal of Fisheries and Aquatic Sciences. ,vol. 70, pp. 128- 141 ,(2013) , 10.1139/CJFAS-2012-0233
Paul A. Hohenlohe, Susan Bassham, Paul D. Etter, Nicholas Stiffler, Eric A. Johnson, William A. Cresko, Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags PLoS Genetics. ,vol. 6, pp. e1000862- ,(2010) , 10.1371/JOURNAL.PGEN.1000862
Elissa M Chasen, Christopher Dietrich, Elaine A Backus, Eileen M Cullen, None, Potato Leafhopper (Hemiptera: Cicadellidae) Ecology and Integrated Pest Management Focused on Alfalfa Journal of Integrated Pest Management. ,vol. 5, pp. 1- 8 ,(2014) , 10.1603/IPM13014
Kevin L. Monteith, Vernon C. Bleich, Thomas R. Stephenson, Becky M. Pierce, Mary M. Conner, Robert W. Klaver, R. Terry Bowyer, Timing of seasonal migration in mule deer: effects of climate, plant phenology, and life‐history characteristics Ecosphere. ,vol. 2, pp. 1- 34 ,(2011) , 10.1890/ES10-00096.1