Unleashing Natural Competence in Lactococcus lactis by Induction of the Competence Regulator ComX

作者: Joyce Mulder , Michiel Wels , Oscar P. Kuipers , Michiel Kleerebezem , Peter A. Bron

DOI: 10.1128/AEM.01320-17

关键词: OperonStreptococcus thermophilusNatural competenceRegulonBiologyLactococcus lactisGeneIn silicoGeneticsBacillus subtilis

摘要: In biotechnological workhorses like Streptococcus thermophilus and Bacillus subtilis, natural competence can be induced, which facilitates genetic manipulation of these microbes. However, in strains the important dairy starter Lactococcus lactis, has not been established to date. silico analysis complete genome sequences 43 L. lactis revealed late gene sets 2 subsp. cremoris (KW2 KW10) at least 10 strains, including model strain IL1403 plant-derived KF147. The remainder all isolates, displayed genomic decay one or more genes. Nisin-controlled expression regulator comX KF147 resulted induction canonical regulon elicited a state this strain. contrast, NZ9000, was predicted encode an incomplete set, failed induce competence. Moreover, mutagenesis comEA-EC operon abolished comX-driven competence, underlining involvement machinery. Finally, introduction nisin-inducible into nisRK-harboring derivatives KW2 allowed also, expanding phenotype other both subspecies.IMPORTANCE Specific bacterial species are able enter DNA is taken up from environment, allowing novel traits. Strains very cultures for fermentation milk cheese production process, where bacteria contribute flavor texture end product. activation industrially relevant organism accelerate research aiming understand traits facilitate engineering strategies harness biodiversity optimized strains.

参考文章(72)
Robert M. Horton, Zeling Cai, Steffan N. Ho, Larry R. Pease, Gene Splicing by Overlap Extension: Tailor-Made Genes Using the Polymerase Chain Reaction BioTechniques. ,vol. 8, pp. 528- 535 ,(2013) , 10.2144/000114017
Roland J. Siezen, Jumamurat R. Bayjanov, Giovanna E. Felis, Marijke R. van der Sijde, Marjo Starrenburg, Douwe Molenaar, Michiel Wels, Sacha A. F. T. van Hijum, Johan E. T. van Hylckama Vlieg, Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays. Microbial Biotechnology. ,vol. 4, pp. 383- 402 ,(2011) , 10.1111/J.1751-7915.2011.00247.X
Steve Fischer, Brian P. Brunk, Feng Chen, Xin Gao, Omar S. Harb, John B. Iodice, Dhanasekaran Shanmugam, David S. Roos, Christian J. Stoeckert, Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups. Current protocols in human genetics. ,vol. 35, ,(2011) , 10.1002/0471250953.BI0612S35
Scott N. Peterson, Chang Kyoo Sung, Robin Cline, Bhushan V. Desai, Erik C. Snesrud, Ping Luo, Jennifer Walling, Haiying Li, Michelle Mintz, Getahun Tsegaye, Patrick C. Burr, Yu Do, Susie Ahn, Joseph Gilbert, Robert D. Fleischmann, Donald A. Morrison, Identification of competence pheromone responsive genes in Streptococcus pneumoniae by use of DNA microarrays Molecular Microbiology. ,vol. 51, pp. 1051- 1070 ,(2004) , 10.1046/J.1365-2958.2003.03907.X
Sandra Muschiol, Murat Balaban, Staffan Normark, Birgitta Henriques‐Normark, Uptake of extracellular DNA: Competence induced pili in natural transformation of Streptococcus pneumoniae BioEssays. ,vol. 37, pp. 426- 435 ,(2015) , 10.1002/BIES.201400125
Alexander Bolotin, Benoît Quinquis, Pierre Renault, Alexei Sorokin, S Dusko Ehrlich, Saulius Kulakauskas, Alla Lapidus, Eugene Goltsman, Michael Mazur, Gordon D Pusch, Michael Fonstein, Ross Overbeek, Nikos Kyprides, Bénédicte Purnelle, Deborah Prozzi, Katrina Ngui, David Masuy, Frédéric Hancy, Sophie Burteau, Marc Boutry, Jean Delcour, André Goffeau, Pascal Hols, Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus Nature Biotechnology. ,vol. 22, pp. 1554- 1558 ,(2004) , 10.1038/NBT1034
Sandra Wydau, Rozenn Dervyn, Jamila Anba, S Dusko Ehrlich, Emmanuelle Maguin, None, Conservation of key elements of natural competence in Lactococcus lactis ssp. Fems Microbiology Letters. ,vol. 257, pp. 32- 42 ,(2006) , 10.1111/J.1574-6968.2006.00141.X
J. C. Mell, R. J. Redfield, Natural Competence and the Evolution of DNA Uptake Specificity Journal of Bacteriology. ,vol. 196, pp. 1471- 1483 ,(2014) , 10.1128/JB.01293-13
Igor Mierau, Michiel Kleerebezem, 10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis Applied Microbiology and Biotechnology. ,vol. 68, pp. 705- 717 ,(2005) , 10.1007/S00253-005-0107-6
Emmanuelle Lerat, Vincent Daubin, Howard Ochman, Nancy A Moran, Evolutionary origins of genomic repertoires in bacteria. PLOS Biology. ,vol. 3, pp. 0807- 0814 ,(2005) , 10.1371/JOURNAL.PBIO.0030130