Phylogenetically diverse groups of Bradyrhizobium isolated from nodules of Crotalaria spp., Indigofera spp., Erythrina brucei and Glycine max growing in Ethiopia.

作者: Aregu Amsalu Aserse , Leena A. Räsänen , Fassil Aseffa , Asfaw Hailemariam , Kristina Lindström

DOI: 10.1016/J.YMPEV.2012.07.008

关键词: Phylogenetic treeMultilocus sequence typingBiologyBradyrhizobiumAmplified fragment length polymorphismCladePhylogeneticsSequence analysisMonophylyBotany

摘要: Ethiopian Bradyrhizobium strains isolated from root nodules of Crotalaria spp., Indigofera Erythina brucei and soybean (Glycine max) represented genetically diverse phylogenetic groups the genus Bradyrhizobium. Strains were characterized using amplified fragment length polymorphism fingerprinting technique (AFLP) multilocus sequence analysis (MLSA) core symbiotic genes. Based on analyses concatenated recA-glnII-rpoB-16S rRNA genes sequences, distributed into fifteen under B. japonicum elkanii super clades. Some isolates belonged to species yuanmingense, type I. However, majority unnamed genospecies these, two unique lineages that most likely represent novel identified among strains. The nodulation nodA gene revealed all sub-clade III.3. further classified 14 together with Africa, as well some originating other tropical subtropics regions. also clustered in nodY/K phylogeny similarly tree. nifH phylogenies generally congruent phylogeny, supporting monophyletic origin partially inferred reflecting obtained their vertically ancestor horizontally more distantly related species.

参考文章(92)
Leena A. Räsänen, Janet I. Sprent, Kristina Lindström, Symbiotic properties of sinorhizobia isolated from Acacia and Prosopis nodules in Sudan and Senegal Plant and Soil. ,vol. 235, pp. 193- 210 ,(2001) , 10.1023/A:1011901706936
William F. Dudman, Lee Belbin, Numerical Taxonomic Analysis of Some Strains of Rhizobium spp. That Uses a Qualitative Coding of Immunodiffusion Reactions Applied and Environmental Microbiology. ,vol. 54, pp. 1825- 1830 ,(1988) , 10.1128/AEM.54.7.1825-1830.1988
D Van Rossum, F P Schuurmans, M Gillis, A Muyotcha, H W Van Verseveld, A H Stouthamer, F C Boogerd, Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots Applied and Environmental Microbiology. ,vol. 61, pp. 1599- 1609 ,(1995) , 10.1128/AEM.61.4.1599-1609.1995
A J Nieuwkoop, Z Banfalvi, N Deshmane, D Gerhold, M G Schell, K M Sirotkin, G Stacey, A locus encoding host range is linked to the common nodulation genes of Bradyrhizobium japonicum. Journal of Bacteriology. ,vol. 169, pp. 2631- 2638 ,(1987) , 10.1128/JB.169.6.2631-2638.1987
M A Jensen, J A Webster, N Straus, Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Applied and Environmental Microbiology. ,vol. 59, pp. 945- 952 ,(1993) , 10.1128/AEM.59.4.945-952.1993
Gwilym Lewis, Legumes of the World ,(2000)