Measuring the diversity of the human microbiota with targeted next-generation sequencing

作者: Francesca Finotello , Eleonora Mastrorilli , Barbara Di Camillo

DOI: 10.1093/BIB/BBW119

关键词: MacroecologyBiologyEcologyDNA sequencingComputational biologyIdentification (biology)MetagenomicsDiversity (politics)Selection (genetic algorithm)Robustness (evolution)Diversity index

摘要: … establishment of large-scale metagenomics projects like the Human … next-generation sequencing (NGS) technologies [14]. Amongst NGS methodologies, targeted amplicon sequencing …

参考文章(60)
Klaus Krippendorff, Mathematical Theory of Communication pp. 614- ,(2009)
Eliana Ruggiero, Jan P. Nicolay, Raffaele Fronza, Anne Arens, Anna Paruzynski, Ali Nowrouzi, Gökçe Ürenden, Christina Lulay, Sven Schneider, Sergij Goerdt, Hanno Glimm, Peter H. Krammer, Manfred Schmidt, Christof von Kalle, High-resolution analysis of the human T-cell receptor repertoire. Nature Communications. ,vol. 6, pp. 8081- 8081 ,(2015) , 10.1038/NCOMMS9081
Alban Ramette, Multivariate analyses in microbial ecology. FEMS Microbiology Ecology. ,vol. 62, pp. 142- 160 ,(2007) , 10.1111/J.1574-6941.2007.00375.X
Victor Greiff, Enkelejda Miho, Ulrike Menzel, Sai T. Reddy, Bioinformatic and Statistical Analysis of Adaptive Immune Repertoires Trends in Immunology. ,vol. 36, pp. 738- 749 ,(2015) , 10.1016/J.IT.2015.09.006
Cristina Mourelle, Exequiel Ezcurra, Differentiation diversity of Argentine cacti and its relationship to environmental factors Journal of Vegetation Science. ,vol. 8, pp. 547- 558 ,(1997) , 10.2307/3237206
Lou Jost, The Relation between Evenness and Diversity Diversity. ,vol. 2, pp. 207- 232 ,(2010) , 10.3390/D2020207
E.C. Pielou, The measurement of diversity in different types of biological collections Journal of Theoretical Biology. ,vol. 13, pp. 131- 144 ,(1966) , 10.1016/0022-5193(66)90013-0
Justin Kuczynski, Christian L. Lauber, William A. Walters, Laura Wegener Parfrey, José C. Clemente, Dirk Gevers, Rob Knight, Experimental and analytical tools for studying the human microbiome Nature Reviews Genetics. ,vol. 13, pp. 47- 58 ,(2012) , 10.1038/NRG3129
Inés Martínez, James C. Stegen, Maria X. Maldonado-Gómez, A. Murat Eren, Peter M. Siba, Andrew R. Greenhill, Jens Walter, The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes Cell Reports. ,vol. 11, pp. 527- 538 ,(2015) , 10.1016/J.CELREP.2015.03.049
James Robert White, Niranjan Nagarajan, Mihai Pop, Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples PLoS Computational Biology. ,vol. 5, pp. e1000352- ,(2009) , 10.1371/JOURNAL.PCBI.1000352