Metagenomic analysis reveals linkages between cecal microbiota and feed efficiency in Xiayan chickens.

作者: Wenya Du , Jixian Deng , Zhuliang Yang , Linghu Zeng , Xiurong Yang

DOI: 10.1016/J.PSJ.2020.09.076

关键词: PrevotellaFood scienceMicrobiomeResidual feed intakeBacteroidesBiologyFeed conversion ratioAlistipesLactobacillusHelicobacter pullorum

摘要: Abstract The cecal microbiota plays a critical role in energy harvest and nutrient digestion, influencing intestinal health the performance of chickens. Feed efficiency (FE) is essential for improving economic saving social resources chicken production may be affected by microbiota. Therefore, to investigate composition functional capacity cecum microbes related FE Xiayan chicken, an indigenous breed Guangxi province, metagenome sequencing was performed on contents. 173 male 167 female chickens were divided into high low groups according residual feed intake. microbial genome extracted sequenced. results showed that genera Bacteroides, Prevotella, Alistipes 3 most abundant each microbiome. linear discriminant analysis effect size revealed 6 potential biomarkers 14 Notably, relative abundance Lactobacillus group higher than both chickens, species Limosilactobacillus oris has score In contrast, some potentially pathogenic microorganisms such as Campylobacter avium females Helicobacter pullorum males enriched group. Predictive had greater ability xenobiotics biodegradation metabolism signaling molecules interaction. addition, host sex found exert effects function associated with FE. These increased our understanding identified many FE, which used improve

参考文章(69)
Ruibang Luo, Binghang Liu, Yinlong Xie, Zhenyu Li, Weihua Huang, Jianying Yuan, Guangzhu He, Yanxiang Chen, Qi Pan, Yunjie Liu, Jingbo Tang, Gengxiong Wu, Hao Zhang, Yujian Shi, Yong Liu, Chang Yu, Bo Wang, Yao Lu, Changlei Han, David W Cheung, Siu-Ming Yiu, Shaoliang Peng, Zhu Xiaoqian, Guangming Liu, Xiangke Liao, Yingrui Li, Huanming Yang, Jian Wang, Tak-Wah Lam, Jun Wang, None, SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler GigaScience. ,vol. 1, pp. 30- 30 ,(2012) , 10.1186/2047-217X-1-18
Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S Garrett, Curtis Huttenhower, Metagenomic biomarker discovery and explanation Genome Biology. ,vol. 12, pp. 1- 18 ,(2011) , 10.1186/GB-2011-12-6-R60
Muriel Derrien, Peter Van Baarlen, Guido Hooiveld, Elisabeth Norin, Michael Müller, Willem M. de Vos, Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila Frontiers in Microbiology. ,vol. 2, pp. 166- 166 ,(2011) , 10.3389/FMICB.2011.00166
Duy Do, Tage Ostersen, Anders Strathe, Thomas Mark, Just Jensen, Haja N Kadarmideen, Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs BMC Genetics. ,vol. 15, pp. 27- 27 ,(2014) , 10.1186/1471-2156-15-27
Nadeem O Kaakoush, Nidhi Sodhi, Jeremy W Chenu, Julian M Cox, Stephen M Riordan, Hazel M Mitchell, The interplay between Campylobacter and Helicobacter species and other gastrointestinal microbiota of commercial broiler chickens Gut Pathogens. ,vol. 6, pp. 18- 18 ,(2014) , 10.1186/1757-4749-6-18
Fredrik H. Karlsson, Frida Fåk, Intawat Nookaew, Valentina Tremaroli, Björn Fagerberg, Dina Petranovic, Fredrik Bäckhed, Jens Nielsen, Symptomatic atherosclerosis is associated with an altered gut metagenome Nature Communications. ,vol. 3, pp. 1245- 1245 ,(2012) , 10.1038/NCOMMS2266
Shao-En Ong, Whole proteomes as internal standards in quantitative proteomics Genome Medicine. ,vol. 2, pp. 49- 49 ,(2010) , 10.1186/GM170
Peter J. Turnbaugh, Ruth E. Ley, Michael A. Mahowald, Vincent Magrini, Elaine R. Mardis, Jeffrey I. Gordon, An obesity-associated gut microbiome with increased capacity for energy harvest Nature. ,vol. 444, pp. 1027- 1031 ,(2006) , 10.1038/NATURE05414