Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
作者： William McLaren , Bethan Pritchard , Daniel Rios , Yuan Chen , Paul Flicek
DOI: 10.1093/BIOINFORMATICS/BTQ330
关键词: Ensembl 、 Open source software 、 Computational biology 、 Biology 、 Genomics 、 Ensembl Genomes 、 World Wide Web 、 SNP 、 Supplementary data
摘要: … Even before the developments reported in this article, Ensembl (Flicek et al., 2010) could also be used to derive similar annotation by setting up a full local Ensembl database containing …
oup.com
oxfordjournals.org
paperity.org参考文章(7)
Stephen T. Sherry, Minghong Ward, Karl Sirotkin, dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation. Genome Research. ,vol. 9, pp. 677- 679 ,(1999) , 10.1101/GR.9.8.677
Yuan Chen, Fiona Cunningham, Daniel Rios, William M McLaren, James Smith, Bethan Pritchard, Giulietta M Spudich, Simon Brent, Eugene Kulesha, Pablo Marin-Garcia, Damian Smedley, Ewan Birney, Paul Flicek, Ensembl variation resources. BMC Genomics. ,vol. 11, pp. 293- 293 ,(2010) , 10.1186/1471-2164-11-293
Nathan Johnson, Andreas Kähäri, Damian Keefe, Stephen Keenan, Rhoda Kinsella, Felix Kokocinski, Gautier Koscielny, Eugene Kulesha, Daniel Lawson, Ian Longden, Tim Massingham, William Mclaren, Karine Megy, Bert Overduin, Bethan Pritchard, Daniel Rios, Magali Ruffier, Michael Schuster, Guy Slater, Damian Smedley, Giulietta Spudich, Y Amy Tang, Stephen Trevanion, Albert Vilella, Jan Vogel, Simon White, Steven P Wilder, Amonida Zadissa, Ewan Birney, Fiona Cunningham, Ian Dunham, Richard Durbin, Xosé M Fernández-Suarez, Javier Herrero, Tim JP Hubbard, Anne Parker, Glenn Proctor, James Smith, Stephen MJ Searle, Paul Flicek, Bronwen L Aken, Benoit Ballester, Kathryn Beal, Eugene Bragin, Simon Brent, Yuan Chen, Peter Clapham, Guy Coates, Susan Fairley, Stephen Fitzgerald, Julio Fernandez-Banet, Leo Gordon, Stefan Gräf, Syed Haider, Martin Hammond, Kerstin Howe, Andrew Jenkinson, None, Ensembl’s 10th year Nucleic Acids Research. ,vol. 38, pp. 557- 562 ,(2010) , 10.1093/NAR/GKP972
Daniel Rios, William M McLaren, Yuan Chen, Ewan Birney, Arne Stabenau, Paul Flicek, Fiona Cunningham, A database and API for variation, dense genotyping and resequencing data BMC Bioinformatics. ,vol. 11, pp. 238- 238 ,(2010) , 10.1186/1471-2105-11-238
Leandro M Moreira, Nalvo F Almeida, Neha Potnis, Luciano A Digiampietri, Said S Adi, Julio C Bortolossi, Ana C da Silva, Aline M da Silva, Fabrício E de Moraes, Julio C de Oliveira, Robson F de Souza, Agda P Facincani, André L Ferraz, Maria I Ferro, Luiz R Furlan, Daniele F Gimenez, Jeffrey B Jones, Elliot W Kitajima, Marcelo L Laia, Rui P Leite, Milton Y Nishiyama, Julio Rodrigues Neto, Letícia A Nociti, David J Norman, Eric H Ostroski, Haroldo A Pereira, Brian J Staskawicz, Renata I Tezza, Jesus A Ferro, Boris A Vinatzer, João C Setubal, None, Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. BMC Genomics. ,vol. 11, pp. 238- 238 ,(2010) , 10.1186/1471-2164-11-238
Lei Chen, Kai-Yan Feng, Yu-Dong Cai, Kuo-Chen Chou, Hai-Peng Li, Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition BMC Bioinformatics. ,vol. 11, pp. 293- 293 ,(2010) , 10.1186/1471-2105-11-293
Rachel Karchin, Next generation tools for the annotation of human SNPs Briefings in Bioinformatics. ,vol. 10, pp. 35- 52 ,(2009) , 10.1093/BIB/BBN047