DNA fingerprinting of the NCI-60 cell line panel.

作者: Philip L. Lorenzi , William C. Reinhold , Sudhir Varma , Amy A. Hutchinson , Yves Pommier

DOI: 10.1158/1535-7163.MCT-08-0921

关键词: Multiple drug resistanceDNAMicrosatellitePolymerase chain reactionCell cultureDNA profilingBiologyDrug discoveryGeneticsScreening tool

摘要: The National Cancer Institute's NCI-60 cell line panel, the most extensively characterized set of cells in existence and a public resource, is frequently used as screening tool for drug discovery. Because many laboratories around world rely on data from cells, confirmation their genetic identities represents an essential step validating results them. Given consequences contamination or misidentification, quality control measures should routinely include DNA fingerprinting. We have, therefore, standard microsatellite short tandem repeats to profile NCI-60, resulting fingerprints are provided here reference. Consistent with previous reports, suggest that several lines have common origins: melanoma MDA-MB-435, MDA-N, M14; central nervous system U251 SNB-19; ovarian OVCAR-8 OVCAR-8/ADR (also called NCI/ADR); prostate DU-145, DU-145 (ATCC), RC0.1. Those also show ability connect two same origin not affected by stable transfection development multidrug resistance. As expected, were able distinguish different tissues-of-origin. serve principally barcodes.

参考文章(31)
John Masters, Re: False Cell Lines Experimental Cell Research. ,vol. 272, pp. 216- 216 ,(2002) , 10.1006/EXCR.2001.5439
Philip L. Lorenzi, Jenny Llamas, Michele Gunsior, Laurent Ozbun, William C. Reinhold, Sudhir Varma, Helen Ji, Hijoo Kim, Amy A. Hutchinson, Elise C. Kohn, Paul K. Goldsmith, Michael J. Birrer, John N. Weinstein, Asparagine synthetase is a predictive biomarker of L-asparaginase activity in ovarian cancer cell lines. Molecular Cancer Therapeutics. ,vol. 7, pp. 3123- 3128 ,(2008) , 10.1158/1535-7163.MCT-08-0589
W. A. Nelson-Rees, R. R. Flandermeyer, P. K. Hawthorne, Banded Marker Chromosomes as Indicators of Intraspecies Cellular Contamination Science. ,vol. 184, pp. 1093- 1096 ,(1974) , 10.1126/SCIENCE.184.4141.1093
Roderick A.F. MacLeod, Wilhelm G. Dirks, Yoshinobu Matsuo, Maren Kaufmann, Herbert Milch, Hans G. Drexler, Widespread intraspecies cross-contamination of human tumor cell lines arising at source. International Journal of Cancer. ,vol. 83, pp. 555- 563 ,(1999) , 10.1002/(SICI)1097-0215(19991112)83:4<555::AID-IJC19>3.0.CO;2-2
Douglas T Ross, Uwe Scherf, Michael B Eisen, Charles M Perou, Christian Rees, Paul Spellman, Vishwanath Iyer, Stefanie S Jeffrey, Matt Van de Rijn, Mark Waltham, Alexander Pergamenschikov, JC Lee, Deval Lashkari, Dari Shalon, Timothy G Myers, John N Weinstein, David Botstein, Patrick O Brown, None, Systematic variation in gene expression patterns in human cancer cell lines. Nature Genetics. ,vol. 24, pp. 227- 235 ,(2000) , 10.1038/73432
Ogechi N. Ikediobi, Mark Reimers, Steffen Durinck, Paul E. Blower, Andrew P. Futreal, Michael R. Stratton, John N. Weinstein, In vitro differential sensitivity of melanomas to phenothiazines is based on the presence of codon 600 BRAF mutation Molecular Cancer Therapeutics. ,vol. 7, pp. 1337- 1346 ,(2008) , 10.1158/1535-7163.MCT-07-2308
John M. Butler, Genetics and genomics of core short tandem repeat loci used in human identity testing. Journal of Forensic Sciences. ,vol. 51, pp. 253- 265 ,(2006) , 10.1111/J.1556-4029.2006.00046.X
A. J. Jeffreys, V. Wilson, S. L. Thein, Individual-specific 'fingerprints' of human DNA. Nature. ,vol. 316, pp. 76- 79 ,(1985) , 10.1038/316076A0
Levi A. Garraway, Hans R. Widlund, Mark A. Rubin, Gad Getz, Aaron J. Berger, Sridhar Ramaswamy, Rameen Beroukhim, Danny A. Milner, Scott R. Granter, Jinyan Du, Charles Lee, Stephan N. Wagner, Cheng Li, Todd R. Golub, David L. Rimm, Matthew L. Meyerson, David E. Fisher, William R. Sellers, Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma Nature. ,vol. 436, pp. 117- 122 ,(2005) , 10.1038/NATURE03664
Uwe Scherf, Douglas T. Ross, Mark Waltham, Lawrence H. Smith, Jae K. Lee, Lorraine Tanabe, Kurt W. Kohn, William C. Reinhold, Timothy G. Myers, Darren T. Andrews, Dominic A. Scudiero, Michael B. Eisen, Edward A. Sausville, Yves Pommier, David Botstein, Patrick O. Brown, John N. Weinstein, A gene expression database for the molecular pharmacology of cancer Nature Genetics. ,vol. 24, pp. 236- 244 ,(2000) , 10.1038/73439