Compensated Transfer Entropy as a Tool for Reliably Estimating Information Transfer in Physiological Time Series

作者: Luca Faes , Giandomenico Nollo , Alberto Porta

DOI: 10.3390/E15010198

关键词: Conditional entropyMathematicsTransfer entropyMinificationAlgorithmArtificial intelligenceMachine learningSeries (mathematics)EstimatorSensitivity (control systems)Information transferFalse positive paradox

摘要: We present a framework for the estimation of transfer entropy (TE) under conditions typical physiological system analysis, featuring short multivariate time series and presence instantaneous causality (IC). The is based on recognizing that TE can be interpreted as difference between two conditional (CE) terms, builds an efficient CE estimator compensates bias occurring high dimensional conditioning vectors follows sequential embedding procedure whereby are formed progressively according to criterion minimization. issue IC faced accounting zero-lag interactions alternative empirical strategies: if deemed physiologically meaningful, effects assimilated lagged make them causally relevant; not, incorporated in both terms obtain compensation. resulting compensated (cTE) tested simulated series, showing its utilization improves sensitivity (from 61% 96%) specificity 5/6 0/6 false positives) detection information respectively when effect meaningful non-meaningful. Then, it evaluated examples cardiovascular neurological supporting feasibility proposed investigation mechanisms.

参考文章(47)
S. Erla, C. Papadelis, L. Faes, C. Braun, G. Nollo, Studying Brain Visuo-Tactile Integration through Cross-Spectral Analysis of Human MEG Recordings 12th Mediterranean Conference on Medical and Biological Engineering and Computing, MEDICON 2010. ,vol. 29, pp. 73- 76 ,(2010) , 10.1007/978-3-642-13039-7_19
Ioannis Vlachos, Dimitris Kugiumtzis, Nonuniform state-space reconstruction and coupling detection Physical Review E. ,vol. 82, pp. 016207- ,(2010) , 10.1103/PHYSREVE.82.016207
Luca Faes, Giandomenico Nollo, Alberto Porta, Non-uniform multivariate embedding to assess the information transfer in cardiovascular and cardiorespiratory variability series Computers in Biology and Medicine. ,vol. 42, pp. 290- 297 ,(2012) , 10.1016/J.COMPBIOMED.2011.02.007
A. Porta, G. Baselli, D. Liberati, N. Montano, C. Cogliati, T. Gnecchi-Ruscone, A. Malliani, S. Cerutti, Measuring regularity by means of a corrected conditional entropy in sympathetic outflow. Biological Cybernetics. ,vol. 78, pp. 71- 78 ,(1998) , 10.1007/S004220050414
A. Porta, T. Bassani, V. Bari, G. D. Pinna, R. Maestri, S. Guzzetti, Accounting for Respiration is Necessary to Reliably Infer Granger Causality From Cardiovascular Variability Series IEEE Transactions on Biomedical Engineering. ,vol. 59, pp. 832- 841 ,(2012) , 10.1109/TBME.2011.2180379
Martin Vejmelka, Milan Paluš, Inferring the directionality of coupling with conditional mutual information Physical Review E. ,vol. 77, pp. 026214- ,(2008) , 10.1103/PHYSREVE.77.026214
Daniel Chicharro, Anders Ledberg, Framework to study dynamic dependencies in networks of interacting processes. Physical Review E. ,vol. 86, pp. 041901- 041901 ,(2012) , 10.1103/PHYSREVE.86.041901