Overview of Public Cancer Databases, Resources, and Visualization Tools

作者: Frank Emmert-Streib , Ricardo de Matos Simoes , Shailesh Tripathi , Matthias Dehmer

DOI: 10.1002/9783527665471.CH2

关键词: BioinformaticsCancerVisualizationBiologyLung cancer

摘要:

参考文章(54)
F. Emmert-Streib, M. Dehmer, Networks for systems biology: conceptual connection of data and function Iet Systems Biology. ,vol. 5, pp. 185- 207 ,(2011) , 10.1049/IET-SYB.2010.0025
John Ellson, Emden Gansner, Lefteris Koutsofios, Stephen C. North, Gordon Woodhull, Graphviz: Open source graph drawing tools graph drawing. pp. 483- 484 ,(2001) , 10.1007/3-540-45848-4_57
Andreas Zanzoni, Montserrat Soler-López, Patrick Aloy, A network medicine approach to human disease FEBS Letters. ,vol. 583, pp. 1759- 1765 ,(2009) , 10.1016/J.FEBSLET.2009.03.001
Z. Hu, J. Mellor, J. Wu, T. Yamada, D. Holloway, C. DeLisi, VisANT: data-integrating visual framework for biological networks and modules Nucleic Acids Research. ,vol. 33, pp. 352- 357 ,(2005) , 10.1093/NAR/GKI431
T Barrette, A Pandey, AM Chinnaiyan, ONCOMINE: A Cancer Microarray Database and Integrated Data-Mining Platform Neoplasia. ,vol. 6, pp. 1- 6 ,(2004) , 10.1016/S1476-5586(04)80047-2
Zhong Wang, Mark Gerstein, Michael Snyder, RNA-Seq: a revolutionary tool for transcriptomics Nature Reviews Genetics. ,vol. 10, pp. 57- 63 ,(2009) , 10.1038/NRG2484
Robert Castelo, Alberto Roverato, Reverse engineering molecular regulatory networks from microarray data with qp-graphs. Journal of Computational Biology. ,vol. 16, pp. 213- 227 ,(2009) , 10.1089/CMB.2008.08TT
Laurin AJ Mueller, Karl G Kugler, Armin Graber, Frank Emmert-Streib, Matthias Dehmer, Structural Measures for Network Biology Using QuACN BMC Bioinformatics. ,vol. 12, pp. 492- 492 ,(2011) , 10.1186/1471-2105-12-492
S. Brohee, K. Faust, G. Lima-Mendez, O. Sand, R. Janky, G. Vanderstocken, Y. Deville, J. van Helden, NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways. Nucleic Acids Research. ,vol. 36, pp. 444- 451 ,(2008) , 10.1093/NAR/GKN336
S. A. Forbes, N. Bindal, S. Bamford, C. Cole, C. Y. Kok, D. Beare, M. Jia, R. Shepherd, K. Leung, A. Menzies, J. W. Teague, P. J. Campbell, M. R. Stratton, P. A. Futreal, COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Research. ,vol. 39, pp. 945- 950 ,(2011) , 10.1093/NAR/GKQ929