Genetic Diversity of Enteric Viruses in Children under Five Years Old in Gabon.

作者: Peter G. Kremsner , Ayola Akim Adegnika , Sandra Niendorf , Daniel Eibach , Thirumalaisamy P. Velavan

DOI: 10.3390/V13040545

关键词: BiologyGenetic diversityCohortPhylogenetic treeDiarrheaSapovirusNorovirusVirologyAstrovirusGenotype

摘要: Enteric viruses are the leading cause of diarrhea in children globally. Identifying viral agents and understanding their genetic diversity could help to develop effective preventive measures. This study aimed determine detection rate four enteric Gabonese aged below five years. Stool samples from <5 years with (n = 177) without 67) were collected April 2018 November 2019. Norovirus, astrovirus, sapovirus, aichivirus A identified using PCR techniques followed by sequencing phylogenetic analyses. At least one agent was 23.2% 14.9% symptomatic asymptomatic participants, respectively. Norovirus (14.7%) astrovirus (7.3%) most prevalent diarrhea, whereas healthy group norovirus (9%) first reported Gabon (6%) predominant. The predominant genogroup GII, consisting mostly genotype GII.P31-GII.4 Sydney. Phylogenetic analysis 3CD region genome revealed presence two genotypes (A C) cohort. Astrovirus sapovirus showed a high diversity, different genotypes, Our findings give new insights into circulation children.

参考文章(50)
Marina Höhne, Sandra Niendorf, Andreas Mas Marques, C.-Thomas Bock, Use of sequence analysis of the P2 domain for characterization of norovirus strains causing a large multistate outbreak of norovirus gastroenteritis in Germany 2012. International Journal of Medical Microbiology. ,vol. 305, pp. 612- 618 ,(2015) , 10.1016/J.IJMM.2015.08.010
Nina Jonsson, Kristin Wahlström, Lennart Svensson, Lena Serrander, A. Michael Lindberg, Aichi virus infection in elderly people in Sweden Archives of Virology. ,vol. 157, pp. 1365- 1369 ,(2012) , 10.1007/S00705-012-1296-9
Yabo Ouyang, Hui Ma, Min Jin, Xinwei Wang, Jingfeng Wang, Lu Xu, Shuxiang Lin, Zhiqiang Shen, Zhaoli Chen, Zhigang Qiu, Zhixian Gao, Lin Peng, Junwen Li, None, Etiology and epidemiology of viral diarrhea in children under the age of five hospitalized in Tianjin China. Archives of Virology. ,vol. 157, pp. 881- 887 ,(2012) , 10.1007/S00705-012-1235-9
D.-Y. Oh, P. A. Silva, B. Hauroeder, S. Diedrich, D. D. P. Cardoso, E. Schreier, Molecular characterization of the first Aichi viruses isolated in Europe and in South America Archives of Virology. ,vol. 151, pp. 1199- 1206 ,(2006) , 10.1007/S00705-005-0706-7
Marc-Alain Widdowson, Alana Sulka, Sandra N. Bulens, R. Suzanne Beard, Sandra S. Chaves, Roberta Hammond, Ellen D.P. Salehi, Ellen Swanson, Jessica Totaro, Ray Woron, Paul S. Mead, Joseph S. Bresee, Stephan S. Monroe, Roger I. Glass, Norovirus and foodborne disease, United States, 1991-2000. Emerging Infectious Diseases. ,vol. 11, pp. 95- 102 ,(2005) , 10.3201/EID1101.040426
Tomoichiro Oka, Qiuhong Wang, Kazuhiko Katayama, Linda J. Saif, Comprehensive Review of Human Sapoviruses Clinical Microbiology Reviews. ,vol. 28, pp. 32- 53 ,(2015) , 10.1128/CMR.00011-14
Maria El Qazoui, Hicham Oumzil, Larbi Baassi, Nezha El Omari, Khalid Sadki, Saaid Amzazi, Mohamed Benhafid, Rajae El Aouad, Rotavirus and Norovirus infections among acute gastroenteritis children in Morocco BMC Infectious Diseases. ,vol. 14, pp. 300- 300 ,(2014) , 10.1186/1471-2334-14-300
Filemón Bucardo, Yaoska Reyes, Lennart Svensson, Johan Nordgren, Predominance of Norovirus and Sapovirus in Nicaragua after Implementation of Universal Rotavirus Vaccination PLoS ONE. ,vol. 9, pp. e98201- ,(2014) , 10.1371/JOURNAL.PONE.0098201
N. M. Kiulia, J. Mans, J. M. Mwenda, M. B. Taylor, Norovirus GII.17 Predominates in Selected Surface Water Sources in Kenya. Food and Environmental Virology. ,vol. 6, pp. 221- 231 ,(2014) , 10.1007/S12560-014-9160-6
Sonia Etenna Lekana-Douki, Claudine Kombila-Koumavor, Dieudonné Nkoghe, Christian Drosten, Jan Felix Drexler, Eric M. Leroy, Molecular epidemiology of enteric viruses and genotyping of rotavirus A, adenovirus and astrovirus among children under 5 years old in Gabon International Journal of Infectious Diseases. ,vol. 34, pp. 90- 95 ,(2015) , 10.1016/J.IJID.2015.03.009