Genome-guided analysis of physiological capacities of Tepidanaerobacter acetatoxydans provides insights into environmental adaptations and syntrophic acetate oxidation.

作者: Bettina Müller , Shahid Manzoor , Adnan Niazi , Erik Bongcam-Rudloff , Anna Schnürer

DOI: 10.1371/JOURNAL.PONE.0121237

关键词: Metabolic pathwayAnaerobic respirationGenomeFormate dehydrogenaseMethanogenBiochemistryBiologyFormateSyntrophyBacteriophage

摘要: This paper describes the genome-based analysis of Tepidanaerobacter acetatoxydans strain Re1, a syntrophic acetate-oxidising bacterium (SAOB). Principal issues such as environmental adaptations, metabolic capacities, and energy conserving systems have been investigated potential consequences for acetate oxidation discussed. Briefly, in pure culture, T. grows with different organic compounds produces main product. In consortium hydrogenotrophic methanogen, it can also reverse its metabolism instead convert to formate/H2 CO2. It only proceed if product formed is continuously removed. process generates very small amount that scarcely enough growth, which makes this particular syntrophy special interest. As crucial member biogas-producing community ammonium-rich engineered AD processes, genomic features conferring ammonium resistance, bacterial defense, oxygen temperature tolerance were found, well attributes related biofilm formation flocculation. likely form an electrochemical gradient by putative electron-bifurcating Rnf complex [Fe-Fe] hydrogenases, observed other acetogens. However, deficiencies acetogenic anaerobic respiration discovered, lack formate dehydrogenase F1F0 ATP synthase. has pathways used under SAO non-SAO conditions. The two complete sets bacteriophage genomes, found be encoded genome, are worthy mention.

参考文章(89)
Bernhard Nüsslein, Kuk‐Jeong Chin, Werner Eckert, Ralf Conrad, None, Evidence for anaerobic syntrophic acetate oxidation during methane production in the profundal sediment of subtropical Lake Kinneret (Israel) Environmental Microbiology. ,vol. 3, pp. 460- 470 ,(2001) , 10.1046/J.1462-2920.2001.00215.X
Anna Schnürer, Gerhard Zellner, Bo H. Svensson, Mesophilic syntrophic acetate oxidation during methane formation in biogas reactors FEMS Microbiology Ecology. ,vol. 29, pp. 249- 261 ,(1999) , 10.1111/J.1574-6941.1999.TB00616.X
Pravin Malla Shrestha, Amelia-Elena Rotaru, Plugging in or Going Wireless: Strategies for Interspecies Electron Transfer Frontiers in Microbiology. ,vol. 5, pp. 237- 237 ,(2014) , 10.3389/FMICB.2014.00237
S. L. Salzberg, A. L. Delcher, S. Kasif, O. White, Microbial gene identification using interpolated Markov models Nucleic Acids Research. ,vol. 26, pp. 544- 548 ,(1998) , 10.1093/NAR/26.2.544
S. Wang, H. Huang, J. Kahnt, R. K. Thauer, A Reversible Electron-Bifurcating Ferredoxin- and NAD-Dependent [FeFe]-Hydrogenase (HydABC) in Moorella thermoacetica Journal of Bacteriology. ,vol. 195, pp. 1267- 1275 ,(2013) , 10.1128/JB.02158-12
Stephanie Bocs, Stephane Cruveiller, David Vallenet, Gregory Nuel, Claudine Medigue, AMIGene: Annotation of MIcrobial Genes Nucleic Acids Research. ,vol. 31, pp. 3723- 3726 ,(2003) , 10.1093/NAR/GKG590
Kuang He, Carl E. Bauer, Chemosensory signaling systems that control bacterial survival. Trends in Microbiology. ,vol. 22, pp. 389- 398 ,(2014) , 10.1016/J.TIM.2014.04.004