Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses

作者: Kris Gevaert , Francis Impens , Petra Van Damme , Bart Ghesquière , Xavier Hanoulle

DOI: 10.1111/J.1742-4658.2007.06149.X

关键词: ProteomicsProteomeAffinity chromatographyShotgun proteomicsPeptideChromatographyTandem mass spectrometryPhosphorylationGlycosylationChemistry

摘要: Numerous gel-free proteomics techniques have been reported over the past few years, introducing a move from proteins to peptides as bits of information in qualitative and quantitative proteome studies. Many shotgun randomly sample thousands manner but overlook vast majority protein modifications that are often crucial for proper structure function. Peptide-based proteomic approaches thus developed profile diverse set including, not at all limited, phosphorylation, glycosylation ubiquitination. Typical here is each modification needs specific, tailor-made analytical procedure. In this minireview, we discuss how one technique - diagonal reverse-phase chromatography applied study two different types modification: processing N-glycosylation. Additionally, an activity-based which purine-binding were profiled by chromatography.

参考文章(82)
Andrew J. Link, Jimmy Eng, David M. Schieltz, Edwin Carmack, Gregory J. Mize, David R. Morris, Barbara M. Garvik, John R. Yates, Direct analysis of protein complexes using mass spectrometry Nature Biotechnology. ,vol. 17, pp. 676- 682 ,(1999) , 10.1038/10890
M.J. Zoller, N.C. Nelson, S.S. Taylor, Affinity labeling of cAMP-dependent protein kinase with p-fluorosulfonylbenzoyl adenosine. Covalent modification of lysine 71. Journal of Biological Chemistry. ,vol. 256, pp. 10837- 10842 ,(1981) , 10.1016/S0021-9258(19)68519-4
David B . Teplow, Ruedi H. Aebersold, Leroy E . Hood, Stephen B . H. Kent, Electroblotting onto activated glass. High efficiency preparation of proteins from analytical sodium dodecyl sulfate-polyacrylamide gels for direct sequence analysis Journal of Biological Chemistry. ,vol. 261, pp. 4229- 4238 ,(1986) , 10.1016/S0021-9258(17)35652-1
Michael P. Washburn, Dirk Wolters, John R. Yates, Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nature Biotechnology. ,vol. 19, pp. 242- 247 ,(2001) , 10.1038/85686
PH O'Farrell, High resolution two-dimensional electrophoresis of proteins. Journal of Biological Chemistry. ,vol. 250, pp. 4007- 4021 ,(1975) , 10.1016/S0021-9258(19)41496-8
Marti F. A. BIERHUIZEN, Moniek WIT, Carin A. R. L. GOVERS, Wijnholt FERWERDA, Carolien KOELEMAN, Odette POS, Willem DIJK, Glycosylation of three molecular forms of human α1‐acid glycoprotein having different interactions with concanavalin A FEBS Journal. ,vol. 175, pp. 387- 394 ,(1988) , 10.1111/J.1432-1033.1988.TB14208.X
TSUNEO OKUYAMA, KAZUO SATAKE, ON THE PREPARATION AND PROPERTIES OF 2, 4, 6-TRINITROPHENYL-AMINO ACIDS AND-PEPTIDES Journal of Biochemistry. ,vol. 47, pp. 454- 466 ,(1960) , 10.1093/OXFORDJOURNALS.JBCHEM.A127083