Methodological Review: Annotating temporal information in clinical narratives

作者: Weiyi Sun , Anna Rumshisky , Ozlem Uzuner

DOI: 10.1016/J.JBI.2013.07.004

关键词: Natural language processingNarrativeTemporal annotationQuality (business)Artificial intelligenceProcess (engineering)DocumentationAnnotationInformaticsInformation retrievalHealth informaticsComputer science

摘要: Temporal information in clinical narratives plays an important role patients' diagnosis, treatment and prognosis. In order to represent narrative accurately, medical natural language processing (MLP) systems need correctly identify interpret temporal information. To promote research this area, the Informatics for Integrating Biology Bedside (i2b2) project developed a temporally annotated corpus of narratives. This contains 310 de-identified discharge summaries, with annotations events, expressions relations. paper describes process followed development discusses annotation guideline development, methodology, quality.

参考文章(36)
Min Li, Jon David Patrick, Extracting temporal information from electronic patient records. american medical informatics association annual symposium. ,vol. 2012, pp. 542- 551 ,(2012)
Robert J. Gaizauskas, Dragomir R. Radev, Roser Saurí, James Pustejovsky, José M. Castaño, Andrea Setzer, Graham Katz, Robert Ingria, TimeML: Robust Specification of Event and Temporal Expressions in Text New Directions in Question Answering. pp. 28- 34 ,(2003)
George Hripcsak, Adam S Rothschild, Agreement, the F-Measure, and Reliability in Information Retrieval Journal of the American Medical Informatics Association. ,vol. 12, pp. 296- 298 ,(2005) , 10.1197/JAMIA.M1733
Joshua C. Denny, Dan M. Roden, Min Jiang, Hua Xu, Mei Liu, Charles M. Stein, Vivian K. Kawai, Modeling Drug Exposure Data in Electronic Medical Records: an Application to Warfarin american medical informatics association annual symposium. ,vol. 2011, pp. 815- 823 ,(2011)
James F. Allen, An interval-based representation of temporal knowledge international joint conference on artificial intelligence. pp. 221- 226 ,(1981)
Robert J. Gaizauskas, Mark Hepple, George Demetriou, Archana Tapuria, Ian Roberts, Andrea Setzer, Yikun Guo, Angus Roberts, Neil Davis, Bill Wheeldin, Jay (Subbarao) Kola, The CLEF Corpus: Semantic Annotation of Clinical Text american medical informatics association annual symposium. ,vol. 2007, pp. 625- 629 ,(2007)
Stephanie W. Haas, Ann K. Irvine, Tessa Sullivan, TN-TIES: A System for Extracting Temporal Information from Emergency Department Triage Notes american medical informatics association annual symposium. ,vol. 2008, pp. 328- 332 ,(2008)
Robert Gaizauskas, Inderjeet Mani, James Pustejovsky, The language of time : a reader Oxford University Press. ,(2005)
Naushad UzZaman, James Pustejovsky, Leon Derczynski, Marc Verhagen, James F. Allen, Hector Llorens, TempEval-3: Evaluating Events, Time Expressions, and Temporal Relations arXiv: Computation and Language. ,(2012)