Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase.

作者: Yoshie Harada , Osamu Ohara , Akira Takatsuki , Hiroyasu Itoh , Nobuo Shimamoto

DOI: 10.1038/35051126

关键词: CrystallographyMolecular motorDNA supercoilTranscription (biology)BiologyScrew axisRNA polymeraseDyneinRotationDNA

摘要: Helical filaments driven by linear molecular motors are anticipated to rotate around their axis, but rotation consistent with the helical pitch has not been observed. 14S dynein and non-claret disjunctional protein (ncd) rotated a microtubule more efficiently than expected for its pitch, myosin an actin filament only poorly. For DNA-based such as RNA polymerase, transcription-induced supercoiling of DNA supports general picture tracking along helix. Here we report direct real-time optical microscopy measurements rate that high-fidelity tracking. Single polymerase molecules attached glass surface >100 revolutions right-handed screw axis double helix rotary torque >5 pN nm. This observation opens possibility resolving individual transcription steps.

参考文章(21)
William S. Ryu, Richard M. Berry, Howard C. Berg, Torque-generating units of the flagellar motor of Escherichia coli have a high duty ratio Nature. ,vol. 403, pp. 444- 447 ,(2000) , 10.1038/35000233
David J DeRosier, The Turn of the Screw: The Bacterial Flagellar Motor Cell. ,vol. 93, pp. 17- 20 ,(1998) , 10.1016/S0092-8674(00)81141-1
Dorothy A. Schafer, Jeff Gelles, Michael P. Sheetz, Robert Landick, Transcription by single molecules of RNA polymerase observed by light microscopy. Nature. ,vol. 352, pp. 444- 448 ,(1991) , 10.1038/352444A0
F.William Studier, Gene 0.3 of bacteriophage T7 acts to overcome the DNA restriction system of the host Journal of Molecular Biology. ,vol. 94, pp. 283- 295 ,(1975) , 10.1016/0022-2836(75)90083-2
Richard A. Walker, Edward D. Salmon, Sharyn A. Endow, The Drosophila claret segregation protein is a minus-end directed motor molecule. Nature. ,vol. 347, pp. 780- 782 ,(1990) , 10.1038/347780A0
Michelle D Wang, Mark J Schnitzer, Hong Yin, Robert Landick, Jeff Gelles, Steven M Block, Force and Velocity Measured for Single Molecules of RNA Polymerase Science. ,vol. 282, pp. 902- 907 ,(1998) , 10.1126/SCIENCE.282.5390.902
K. Adachi, R. Yasuda, H. Noji, H. Itoh, Y. Harada, M. Yoshida, K. Kinosita, Stepping rotation of F1-ATPase visualized through angle-resolved single-fluorophore imaging Proceedings of the National Academy of Sciences of the United States of America. ,vol. 97, pp. 7243- 7247 ,(2000) , 10.1073/PNAS.120174297
I. Sase, H. Miyata, S. Ishiwata, K. Kinosita, Axial rotation of sliding actin filaments revealed by single-fluorophore imaging Proceedings of the National Academy of Sciences of the United States of America. ,vol. 94, pp. 5646- 5650 ,(1997) , 10.1073/PNAS.94.11.5646
Yoshie Harada, Takashi Funatsu, Katsuhiko Murakami, Yoshikazu Nonoyama, Akira Ishihama, Toshio Yanagida, Single-Molecule Imaging of RNA Polymerase-DNA Interactions in Real Time Biophysical Journal. ,vol. 76, pp. 709- 715 ,(1999) , 10.1016/S0006-3495(99)77237-1
T. Strick, J.-F. Allemand, D. Bensimon, R. Lavery, V. Croquette, Phase coexistence in a single DNA molecule Physica A-statistical Mechanics and Its Applications. ,vol. 263, pp. 392- 404 ,(1999) , 10.1016/S0378-4371(98)00540-8