作者: Akira Nakayama , Gaku Arai , Shohei Yamazaki , Tetsuya Taketsugu
DOI: 10.1063/1.4833563
关键词: QM/MM 、 Molecular dynamics 、 Excited state 、 Aqueous solution 、 Hydrogen bond 、 Thymine 、 Molecule 、 Photochemistry 、 Chemistry 、 Solvent effects
摘要: On-the-fly excited-state quantum mechanics/molecular mechanics molecular dynamics (QM/MM-MD) simulations of thymine in aqueous solution are performed to investigate the role solvent water molecules on nonradiative deactivation process. The complete active space second-order perturbation theory (CASPT2) method is employed for a molecule as QM part order provide reliable description potential energies. It found that, addition previously reported pathway involving twisting C-C double bond pyrimidine ring, another efficient leading conical intersections that accompanies out-of-plane displacement carbonyl group observed solution. Decay through this not gas phase simulations, and our analysis indicates hydrogen bonds with play key stabilizing energies additional decay pathway.