Solvent effects on the ultrafast nonradiative deactivation mechanisms of thymine in aqueous solution: Excited-state QM/MM molecular dynamics simulations

作者: Akira Nakayama , Gaku Arai , Shohei Yamazaki , Tetsuya Taketsugu

DOI: 10.1063/1.4833563

关键词: QM/MMMolecular dynamicsExcited stateAqueous solutionHydrogen bondThymineMoleculePhotochemistryChemistrySolvent effects

摘要: On-the-fly excited-state quantum mechanics/molecular mechanics molecular dynamics (QM/MM-MD) simulations of thymine in aqueous solution are performed to investigate the role solvent water molecules on nonradiative deactivation process. The complete active space second-order perturbation theory (CASPT2) method is employed for a molecule as QM part order provide reliable description potential energies. It found that, addition previously reported pathway involving twisting C-C double bond pyrimidine ring, another efficient leading conical intersections that accompanies out-of-plane displacement carbonyl group observed solution. Decay through this not gas phase simulations, and our analysis indicates hydrogen bonds with play key stabilizing energies additional decay pathway.

参考文章(50)
Yujie Wu, Harald L. Tepper, Gregory A. Voth, Flexible simple point-charge water model with improved liquid-state properties Journal of Chemical Physics. ,vol. 124, pp. 024503- 024503 ,(2006) , 10.1063/1.2136877
E. Samoylova, H. Lippert, S. Ullrich, I. V. Hertel, W. Radloff, T. Schultz, Dynamics of Photoinduced Processes in Adenine and Thymine Base Pairs Journal of the American Chemical Society. ,vol. 127, pp. 1782- 1786 ,(2005) , 10.1021/JA044369Q
Luis Serrano-Andrés, Manuela Merchán, Antonio Carlos Borin, A three-state model for the photophysics of guanine. Journal of the American Chemical Society. ,vol. 130, pp. 2473- 2484 ,(2008) , 10.1021/JA0744450
Paolo Celani, Hans-Joachim Werner, Multireference perturbation theory for large restricted and selected active space reference wave functions Journal of Chemical Physics. ,vol. 112, pp. 5546- 5557 ,(2000) , 10.1063/1.481132
Yonggang He, Chengyin Wu, Wei Kong, Decay Pathways of Thymine and Methyl-Substituted Uracil and Thymine in the Gas Phase Journal of Physical Chemistry A. ,vol. 107, pp. 5145- 5148 ,(2003) , 10.1021/JP034733S
Jesús González-Vázquez, Leticia González, Elena Samoylova, Thomas Schultz, Thymine relaxation after UV irradiation: the role of tautomerization and πσ* states Physical Chemistry Chemical Physics. ,vol. 11, pp. 3927- 3934 ,(2009) , 10.1039/B815602F
Yannick Mercier, Fabrizio Santoro, Mar Reguero, Roberto Improta, The Decay from the Dark nπ* Excited State in Uracil: An Integrated CASPT2/CASSCF and PCM/TD-DFT Study in the Gas Phase and in Water Journal of Physical Chemistry B. ,vol. 112, pp. 10769- 10772 ,(2008) , 10.1021/JP804785P
Hyuk Kang, Kang Taek Lee, Boyong Jung, Yeon Jae Ko, Seong Keun Kim, Intrinsic lifetimes of the excited state of DNA and RNA bases Journal of the American Chemical Society. ,vol. 124, pp. 12958- 12959 ,(2002) , 10.1021/JA027627X
Yonggang He, Chengyin Wu, Wei Kong, Photophysics of Methyl-Substituted Uracils and Thymines and Their Water Complexes in the Gas Phase Journal of Physical Chemistry A. ,vol. 108, pp. 943- 949 ,(2004) , 10.1021/JP036553O
Kerstin. Andersson, Per Aake. Malmqvist, Bjoern O. Roos, Andrzej J. Sadlej, Krzysztof. Wolinski, Second-order perturbation theory with a CASSCF reference function The Journal of Physical Chemistry. ,vol. 94, pp. 5483- 5488 ,(1990) , 10.1021/J100377A012