Triple helical polynucleotidic structures: sugar conformations determined by FTIR spectroscopy.

作者: J. Liquier , P. Coffinier , M. Firon , E. Taillandier

DOI: 10.1080/07391102.1991.10507927

关键词: Analytical chemistryCrystallographyAbsorption (chemistry)Infrared spectroscopySpectral lineChemistryDouble bondNucleic acidPolynucleotideFourier transform infrared spectroscopyHydrogen bond

摘要: Fourier Transform Infrared Spectra of triple stranded polynucleotides containing homopurine dA or rA and homopyrimidine dT rU strands have been obtained in H2O D2O solutions as well hydrated films at various relative humidities. The spectra are interpreted by comparison with those double helixes identical base sugar composition. study the spectral domain corresponding to in-plane bond stretching vibrations bases shows that whatever initial duplex characterized a different IR spectrum (A family form poly rA.poly rU, heternomous dT, B dA.poly dT), triplexes present similar reflecting interactions. A particular attention is devoted 950-800 cm-1 region which contains marker bands conformation nucleic acids. In solution existence only N (C3'endo-A form) type pucker detected rU.poly dt.poly rU. On contrary absorption characteristic both S (C2'endo-B sugars for dT.poly dT. Finally mainly observed

参考文章(25)
F.B. Howard, J. Frazier, H. Todd Miles, Interaction of Polyribothymidylic Acid with Polyadenylic Acid Journal of Biological Chemistry. ,vol. 246, pp. 7073- 7086 ,(1971) , 10.1016/S0021-9258(19)45856-0
R. J. H. Clark, R. E. Hester, Advances in Infrared and Raman Spectroscopy ,(1983)
Robert D. Wells, David A. Collier, Jeffery C. Hanvey, Mitsuhiro Shimizu, Franz Wohlrab, The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences. The FASEB Journal. ,vol. 2, pp. 2939- 2949 ,(1988) , 10.1096/FASEBJ.2.14.3053307
Trung Le Doan, Loic Perrouault, Danièle Praseuth, Nourcddine Habhoub, Jean-Luc Decout, Nguyen T. Thuong, Jean Lhomme, Claude Héène, Sequence-specific recognition, photocrosslinking and cleavage of the DNA double helix by an oligo-(α]-thymidylate covalently linked to an azidoproflavine derivative Nucleic Acids Research. ,vol. 15, pp. 7749- 7760 ,(1987) , 10.1093/NAR/15.19.7749
Struther Arnott, Erik Selsing, Structures for the polynucleotide complexes poly(dA) · poly(dT) and poly(dT) · poly(dA) · poly(dT) Journal of Molecular Biology. ,vol. 88, pp. 509- 521 ,(1974) , 10.1016/0022-2836(74)90498-7
L. Perrouault, U. Asseline, Christian Rivalle, N. T. Thuong, E. Bisagni, C. Giovannangeli, T. Le Doan, C. Hélène, Sequence-specific artificial photo-induced endonucleases based on triple helix-forming oligonucleotides. Nature. ,vol. 344, pp. 358- 360 ,(1990) , 10.1038/344358A0
J. C. Francois, T. Saison-Behmoaras, C. Barbier, M. Chassignol, N. T. Thuong, C. Helene, Sequence-specific recognition and cleavage of duplex DNA via triple-helix formation by oligonucleotides covalently linked to a phenanthroline-copper chelate. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 86, pp. 9702- 9706 ,(1989) , 10.1073/PNAS.86.24.9702
J. Liquier, A. Akhebat, E. Taillandier, F. Ceolin, T.Huynh Dinh, J. Igolen, Characterization by FTIR spectroscopy of the oligoribonucleotide duplexes r(A-U)6 and r(A-U)8 Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. ,vol. 47, pp. 177- 186 ,(1991) , 10.1016/0584-8539(91)80089-2