Microsatellite marker development from next-generation sequencing in the New England cottontail (Sylvilagus transitionalis) and cross-amplification in the eastern cottontail (S. floridanus).
作者： Timothy L. King , Michael Eackles , Aaron Aunins , Thomas J. McGreevy , Thomas P. Husband
DOI: 10.1186/S13104-017-3062-2
关键词: Population 、 Genetic variation 、 Endangered species 、 Evolutionary biology 、 Biological dispersal 、 DNA sequencing 、 Biology 、 Eastern cottontail 、 Genetic structure 、 Microsatellite
摘要: Objective The New England cottontail (Sylvilagus transitionalis) is a species of high conservation priority in the Northeastern United States, and was candidate for federal listing under Endangered Species Act until recent decision determined that actions were sufficient to preclude listing. The aim this study develop suite microsatellite loci guide future research efforts such as analysis population genetic structure, variation, dispersal, mark-recapture estimation.
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Ian W. Evett, Bruce S. Weir, Interpreting DNA Evidence: Statistical Genetics for Forensic Scientists ,(1998)
Steve Rozen, Helen Skaletsky, Primer3 on the WWW for general users and for biologist programmers. Methods of Molecular Biology. ,vol. 132, pp. 365- 386 ,(2000) , 10.1385/1-59259-192-2:365
Daniel R. Brubaker, Adrienne I. Kovach, Mark J. Ducey, Walter J. Jakubas, Kathleen M. O'brien, Factors influencing detection in occupancy surveys of a threatened lagomorph Wildlife Society Bulletin. ,vol. 38, pp. 513- 523 ,(2014) , 10.1002/WSB.416
ROD PEAKALL, PETER E. SMOUSE, genalex 6: genetic analysis in Excel. Population genetic software for teaching and research Molecular Ecology Notes. ,vol. 6, pp. 288- 295 ,(2006) , 10.1111/J.1471-8286.2005.01155.X
JOHN A. LITVAITIS, Response of Early Successional Vertebrates to Historic Changes in Land Use Conservation Biology. ,vol. 7, pp. 866- 873 ,(1993) , 10.1046/J.1523-1739.1993.740866.X
T. L. King, M. S. Eackles, D. C. Chapman, Tools for assessing kinship, population structure, phylogeography, and interspecific hybridization in Asian carps invasive to the Mississippi River, USA: isolation and characterization of novel tetranucleotide microsatellite DNA loci in silver carp Hypophthalmichthys molitrix Conservation Genetics Resources. ,vol. 3, pp. 397- 401 ,(2011) , 10.1007/S12686-010-9285-3
Lindsey E. Fenderson, Adrienne I. Kovach, John A. Litvaitis, Kathleen M. O'Brien, Kelly M. Boland, Walter J. Jakubas, A multiscale analysis of gene flow for the New England cottontail, an imperiled habitat specialist in a fragmented landscape. Ecology and Evolution. ,vol. 4, pp. 1853- 1875 ,(2014) , 10.1002/ECE3.1068
John A. Litvaitis, Are pre-Columbian conditions relevant baselines for managed forests in the northeastern United States? Forest Ecology and Management. ,vol. 185, pp. 113- 126 ,(2003) , 10.1016/S0378-1127(03)00250-0
Francois Rousset, None, genepop'007: a complete re-implementation of the genepop software for Windows and Linux Molecular Ecology Resources. ,vol. 8, pp. 103- 106 ,(2008) , 10.1111/J.1471-8286.2007.01931.X
Lindsey E. Fenderson, Adrienne I. Kovach, John A. Litvaitis, Marianne K. Litvaitis, Population genetic structure and history of fragmented remnant populations of the New England cottontail ( Sylvilagus transitionalis ) Conservation Genetics. ,vol. 12, pp. 943- 958 ,(2011) , 10.1007/S10592-011-0197-X