Bacteriophage B103: complete DNA sequence of its genome and relationship to other Bacillus phages.
作者： Tamara Pečenková , Vladimı́r Beneš , Jan Pačes , Čestmı́r Vlček , Václav Pačes
DOI: 10.1016/S0378-1119(97)00363-6
关键词: Codon usage bias 、 Genetics 、 Biology 、 Open reading frame 、 Bacteriophage 、 Genome 、 Gene 、 Bacillus Phage 、 DNA sequencing 、 ORFS
摘要: Abstract The genome of Bacillus subtilis bacteriophage B103 consists double-stranded linear DNA 18 630 bp long. was sequenced, and the sequence compared with sequences closely related phages, namely members phage ϕ 29 family. Among them, Nf shown to be most B103. Comparisons several open reading frames (ORFs) among familly helped identify genes 1 5. A cluster ORFs between 16 17 contains two partial homology located in same region. There are three more this region good ribosome binding sites (RBS) optimal codon usage that not homologous any ORFs. function these five remains unexplained. It major promoters characterized retained Where many substitutions occur vicinity a promoter, at least −10 −35 boxes conserved.
elsevier.com
sci-hub.se 参考文章(26)
V. Pačes, Z. Hostomský, Č. Vlček, P. Urbánek, S. Zadražil, Transcriptional and Translational Signals in Phages PZA and ø29 Gene Manipulation and Expression. pp. 209- 224 ,(1985) , 10.1007/978-94-011-6565-5_16
Jeremy W. Dale, Gene manipulation and expression Enzyme and Microbial Technology. ,vol. 9, pp. 572- ,(1987) , 10.1016/0141-0229(87)90092-5
David A. Dubnau, The Molecular biology of the bacilli Academic Press. ,(1982)
S. Keilty, M. Rosenberg, Constitutive function of a positively regulated promoter reveals new sequences essential for activity. Journal of Biological Chemistry. ,vol. 262, pp. 6389- 6395 ,(1987) , 10.1016/S0021-9258(18)45582-2
R P Mellado, F Moreno, E Viñuela, M Salas, B E Reilly, D L Anderson, Genetic analysis of bacteriophage phi 29 of Bacillus subtilis: integration and mapping of reference mutants of two collections. Journal of Virology. ,vol. 19, pp. 495- 500 ,(1976) , 10.1128/JVI.19.2.495-500.1976
Vladimír Benes̆, Lubos̆ Arnold, Jir̆i Smrt, Václav Pac̆es, Nucleotide sequence of the right early region of Bacillus phage φ15 and comparison with related phages: reorganization of gene 17 during evolution Gene. ,vol. 75, pp. 341- 347 ,(1989) , 10.1016/0378-1119(89)90281-3
Beatriz Nuez, Margarita Salas, Bacteriophage Nf DNA region controlling late transcription: structural and functional homology with bacteriophage φ29 Nucleic Acids Research. ,vol. 21, pp. 2861- 2865 ,(1993) , 10.1093/NAR/21.12.2861
F. Rojo, I. Barthelemy, B. Nuez, M. Serrano, M. Salas, Transcription regulation in Bacillus subtilis phage Φ29 Research in Microbiology. ,vol. 142, pp. 771- 777 ,(1991) , 10.1016/0923-2508(91)90054-E
Julio Gutiérrez, Javier Vinós, Ignacio Prieto, Enrique Méndez, Jose M. Hermoso, Margarita Salas, Signals in the φ29 DNA-terminal protein template for the initiation of phage φ29 DNA replication Virology. ,vol. 155, pp. 474- 483 ,(1986) , 10.1016/0042-6822(86)90209-6
Yukiko Mizukami, Takao Sekiya, Hideo Hirokawa, The nucleotide sequences of the heterologous region between the genomes of Bacillus phages M2 and Nf that indicate the two phages are originally identical FEBS Letters. ,vol. 197, pp. 311- 314 ,(1986) , 10.1016/0014-5793(86)80348-9