Energy Parameters in Polypeptides. VI. Conformational Energy Analysis of the N-Acetyl N′-Methyl Amides of the Twenty Naturally Occurring Amino Acids

作者: Peter N. Lewis , Frank A. Momany , Harold A. Scheraga

DOI: 10.1002/IJCH.197300017

关键词: Computational chemistryConformational energyAmino acidChemistryResidue (chemistry)Statistical weightStereochemistry

摘要: The conformational space accessible to the N-acetyl N′-methyl amides of 20 naturally occurring amino acids has been explored extensively with aid empirical energy functions, and many minima have located. statistical weights for all ≤ 3 kcal above lowest each residue calculated. In numerous cases, conformation does not possess highest weight, thereby emphasizing importance considering librations when comparing theoretical experimental results. calculated minimum-energy conformations, as well those are most part in good agreement results from studies these compounds solution crystalline state.

参考文章(50)
Harold A. Scheraga, Calculations of Conformations of Polypeptides Advances in Physical Organic Chemistry. ,vol. 6, pp. 103- 184 ,(1968) , 10.1016/S0065-3160(08)60255-5
V.F. Bystrov, S.L. Portnova, V.I. Tsetlin, V.T. Ivanov, Yu.A. Ovchinnikov, Conformational studies of peptide systems Tetrahedron. ,vol. 25, pp. 493- 515 ,(1969) , 10.1016/S0040-4020(01)83261-0
G.N. Ramachandran, V. Sasisekharan, Conformation of Polypeptides and Proteins Advances in Protein Chemistry. ,vol. 23, pp. 283- 438 ,(1968) , 10.1016/S0065-3233(08)60402-7
Nobuhiro Gō, Harold A. Scheraga, Analysis of the Contribution of Internal Vibrations to the Statistical Weights of Equilibrium Conformations of Macromolecules The Journal of Chemical Physics. ,vol. 51, pp. 4751- 4767 ,(1969) , 10.1063/1.1671863
Bernard Maigret, Bernard Pullman, David Perahia, Molecular orbital calculations on the conformation of polypeptides and proteins Journal of Theoretical Biology. ,vol. 31, pp. 269- 285 ,(1971) , 10.1016/0022-5193(71)90187-1
Bernard Pullman, Bernard Maigret, David Perahia, Molecular orbital calculations on the conformation of polypeptides and proteins Theoretical Chemistry Accounts. ,vol. 18, pp. 44- 56 ,(1970) , 10.1007/BF00533696
J. Dow, L. H. Jensen, S. K. Mazumdar, R. Srinivasan, G. N. Ramachandran, Refinement of the structure of arginine hydrochloride monohydrate Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry. ,vol. 26, pp. 1662- 1671 ,(1970) , 10.1107/S0567740870004697
Peter N. Lewis, Harold A. Scheraga, Predictions of structural homologies in cytochrome c proteins. Archives of Biochemistry and Biophysics. ,vol. 144, pp. 576- 583 ,(1971) , 10.1016/0003-9861(71)90363-8
Karen E. B. Platzer, Frank A. Momany, Harold A. Scheraga, CONFORMATIONAL ENERGY CALCULATIONS OF ENZYME-SUBSTRATE INTERACTIONS. I. Computation of Preferred Conformations of Some Substrates of α-Chymotrypsin International Journal of Peptide and Protein Research. ,vol. 4, pp. 187- 200 ,(2009) , 10.1111/J.1399-3011.1972.TB03419.X
G. N. Ramachandran, R. Chandrasekaran, Conformational energy map of a dipeptide unit in relation to infrared and nuclear magnetic resonance data Biopolymers. ,vol. 10, pp. 935- 939 ,(1971) , 10.1002/BIP.360100515