Continued evolution of West Nile virus, Houston, Texas, USA, 2002-2012.
作者： Brian R. Mann , Allison R. McMullen , Daniele M. Swetnam , Vence Salvato , Martin Reyna
关键词: Genomic sequencing 、 West Nile virus 、 Viral evolution 、 Virology 、 Phylogenetics 、 Flavivirus 、 Biology 、 Genetic relationship 、 Zoology 、 Phylogenetic tree 、 Phylogeography
摘要: We investigated the genetics and evolution of West Nile virus (WNV) since initial detection in United States 1999 on basis continual surveillance studies Houston, Texas, USA, metropolitan area (Harris County) as a surrogate model for WNV national scale. Full-length genomic sequencing 14 novel 2010–2012 isolates collected from resident birds Harris County demonstrates emergence 4 independent genetic groups distinct historical strains circulating greater Houston region 2002. Phylogenetic geospatial analyses 2012 indicate closer relationship with 2003–2006 than more recent 2007–2011 isolates. Inferred monophyletic relationships these several 2006–2009 northeastern US supports potential introduction strain Texas 2010. These results emphasize need to maintain activities better understand transmission dynamics States.
cdc.gov
elsevier.com
sci-hub.se 参考文章(31)
T A Hall, BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT Nucleic Acids Symposium Series. ,vol. 41, pp. 95- 98 ,(1999) , 10.14601/PHYTOPATHOL_MEDITERR-14998U1.29
Sergei L Kosakovsky Pond, Simon D. W Frost, Zehava Grossman, Michael B Gravenor, Douglas D Richman, Andrew J. Leigh Brown, Adaptation to different human populations by HIV-1 revealed by codon-based analyses. PLOS Computational Biology. ,vol. 2, pp. 530- 538 ,(2005) , 10.1371/JOURNAL.PCBI.0020062
Bradley J. Blitvich, Transmission dynamics and changing epidemiology of West Nile virus. Animal Health Research Reviews. ,vol. 9, pp. 71- 86 ,(2008) , 10.1017/S1466252307001430
Allison R. McMullen, Fiona J. May, Li Li, Hilda Guzman, Rudy Bueno, James A. Dennett, Robert B. Tesh, Alan D.T. Barrett, Evolution of New Genotype of West Nile Virus in North America Emerging Infectious Diseases. ,vol. 17, pp. 785- 793 ,(2011) , 10.3201/EID1705.101707
Larry E. Davis, Roberta DeBiasi, Diane E. Goade, Kathleen Y. Haaland, Jennifer A. Harrington, JoAnn B. Harnar, Steven A. Pergam, Molly K. King, B. K. DeMasters, Kenneth L. Tyler, West Nile virus neuroinvasive disease Annals of Neurology. ,vol. 60, pp. 286- 300 ,(2006) , 10.1002/ANA.20959
C. Todd Davis, Gregory D. Ebel, Robert S. Lanciotti, Aaron C. Brault, Hilda Guzman, Marina Siirin, Amy Lambert, Ray E. Parsons, David W.C. Beasley, Robert J. Novak, Darwin Elizondo-Quiroga, Emily N. Green, David S. Young, Lillian M. Stark, Michael A. Drebot, Harvey Artsob, Robert B. Tesh, Laura D. Kramer, Alan D.T. Barrett, Phylogenetic analysis of North American West Nile virus isolates, 2001–2004: Evidence for the emergence of a dominant genotype Virology. ,vol. 342, pp. 252- 265 ,(2005) , 10.1016/J.VIROL.2005.07.022
Luigi Bertolotti, Uriel D. Kitron, Edward D. Walker, Marilyn O. Ruiz, Jeffrey D. Brawn, Scott R. Loss, Gabriel L. Hamer, Tony L. Goldberg, Fine-scale genetic variation and evolution of West Nile Virus in a transmission “hot spot” in suburban Chicago, USA Virology. ,vol. 374, pp. 381- 389 ,(2008) , 10.1016/J.VIROL.2007.12.040
Mark A. Miller, Wayne Pfeiffer, Terri Schwartz, Creating the CIPRES Science Gateway for inference of large phylogenetic trees grid computing environments. pp. 1- 8 ,(2010) , 10.1109/GCE.2010.5676129
Eleanor Deardorff, José G. Estrada-Franco, Aaron C. Brault, Roberto Navarro-Lopez, Arturo Campomanes-Cortes, Pedro Paz-Ramirez, Mario Solis-Hernandez, Wanichaya N. Ramey, C. Todd Davis, David W.C. Beasley, Robert B. Tesh, Alan D.T. Barrett, Scott C. Weaver, Introductions of West Nile Virus Strains to Mexico Emerging Infectious Diseases. ,vol. 12, pp. 314- 318 ,(2006) , 10.3201/EID1202.050871
Mariaejandra Morales, Maria Barrandeguy, Cintia Fabbri, Jorge Garcia, Aldana Vissani, Karina Trono, Geronimo Gutierrez, Santiago Pigretti, Hernan Menchaca, Nelson Garrido, Nora Taylor, Fernando Fernandez, Silvana Levis, Delia Enria, West Nile virus isolation from equines in Argentina, 2006. Emerging Infectious Diseases. ,vol. 12, pp. 1559- 1561 ,(2006) , 10.3201/EID1210.060852