Photorespiration pathways in a chemolithoautotroph

作者: Nico J. Claassens , Giovanni Scarinci , Axel Fischer , Avi I. Flamholz , William Newell

DOI: 10.1101/2020.05.08.083683

关键词: BiochemistryRuBisCOCupriavidus necatorGlyoxylate cycleChemistryCarbon fixationCyanobacteriaOxidative decarboxylationPhotorespirationMetabolism

摘要: Carbon fixation via the Calvin cycle is constrained by side activity of Rubisco with dioxygen, generating 2-phosphoglycolate. The metabolic recycling 2-phosphoglycolate, an essential process termed photorespiration, was extensively studied in photoautotrophic organisms, including plants, algae, and cyanobacteria, but remains uncharacterized chemolithoautotrophic bacteria. Here, we study photorespiration model chemolithoautotroph Cupriavidus necator (Ralstonia eutropha) characterizing proxy-process glycolate metabolism, performing comparative transcriptomics autotrophic growth under low high CO2 concentrations, testing phenotypes gene deletion strains at ambient CO2. We find that canonical plant-like C2 does not operate this bacterium instead bacterial-like glycerate pathway main photorespiratory pathway. Upon disruption pathway, oxidative which term malate cycle, supports photorespiration. In glyoxylate condensed acetyl-CoA to give malate, undergoes two decarboxylation steps regenerate acetyl-CoA. When both pathways are disrupted, abolished present bioinformatic data suggesting may support diverse This thus demonstrates a so-far unknown highlighting important diversity microbial carbon metabolism.

参考文章(53)
O Lenz, E Schwartz, J Dernedde, M Eitinger, B Friedrich, The Alcaligenes eutrophus H16 hoxX gene participates in hydrogenase regulation. Journal of Bacteriology. ,vol. 176, pp. 4385- 4393 ,(1994) , 10.1128/JB.176.14.4385-4393.1994
J Schäferjohann, J G Yoo, B Kusian, B Bowien, The cbb operons of the facultative chemoautotroph Alcaligenes eutrophus encode phosphoglycolate phosphatase. Journal of Bacteriology. ,vol. 175, pp. 7329- 7340 ,(1993) , 10.1128/JB.175.22.7329-7340.1993
Peng Cui, Shoudong Zhang, Feng Ding, Shahjahan Ali, Liming Xiong, Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis. Genome Biology. ,vol. 15, pp. 1- 18 ,(2014) , 10.1186/GB-2014-15-1-R1
Claudia S Gai, Jingnan Lu, Christopher J Brigham, Amanda C Bernardi, Anthony J Sinskey, Insights into bacterial CO2 metabolism revealed by the characterization of four carbonic anhydrases in Ralstonia eutropha H16 AMB Express. ,vol. 4, pp. 2- 2 ,(2014) , 10.1186/2191-0855-4-2
A. R. Fernie, H. Bauwe, M. Eisenhut, A. Florian, D. T. Hanson, M. Hagemann, O. Keech, M. Mielewczik, Z. Nikoloski, C. Peterhänsel, S. Roje, R. Sage, S. Timm, S. von Cammerer, A. P. M. Weber, P. Westhoff, Perspectives on plant photorespiratory metabolism. Plant Biology. ,vol. 15, pp. 748- 753 ,(2013) , 10.1111/J.1438-8677.2012.00693.X
Rainer Cramm, Genomic view of energy metabolism in Ralstonia eutropha H16. Journal of Molecular Microbiology and Biotechnology. ,vol. 16, pp. 38- 52 ,(2009) , 10.1159/000142893
Le You, Bert Berla, Lian He, Himadri B. Pakrasi, Yinjie J. Tang, 13C‐MFA delineates the photomixotrophic metabolism of Synechocystis sp. PCC 6803 under light‐ and carbon‐sufficient conditions Biotechnology Journal. ,vol. 9, pp. 684- 692 ,(2014) , 10.1002/BIOT.201300477
G. A. Codd, B. Bowien, H. G. Schlegel, Glycollate production and excretion byAlcaligenes eutrophus Archives of Microbiology. ,vol. 110, pp. 167- 171 ,(1976) , 10.1007/BF00690224
Eric G. Norman, Brian Colman, Formation and metabolism of glycolate in the cyanobacterium coccochloris peniocystis Archives of Microbiology. ,vol. 157, pp. 375- 380 ,(1992) , 10.1007/BF00248684