Structural and Biochemical Analysis of a Unique Phosphatase from Bdellovibrio bacteriovorus Reveals Its Structural and Functional Relationship with the Protein Tyrosine Phosphatase Class of Phytase

作者: Robert J. Gruninger , John Thibault , Michael J. Capeness , Robert Till , Steven C. Mosimann

DOI: 10.1371/JOURNAL.PONE.0094403

关键词: BdellovibrioActive siteProtein tyrosine phosphataseEnzymeBiochemistryPhosphataseBdellovibrio bacteriovorusBiologyOpen reading frameConserved sequenceGeneral Biochemistry, Genetics and Molecular BiologyGeneral Agricultural and Biological SciencesGeneral Medicine

摘要: Bdellovibrio bacteriovorus is an unusual δ-proteobacterium that invades and preys on other Gram-negative bacteria of potential interest as a whole cell therapeutic against pathogens man, animals crops. PTPs (protein tyrosine phosphatases) are important class enzyme involved in desphosphorylating variety substrates, often with implications signaling. The B. open reading frame Bd1204 predicted to encode PTP unknown function. both structurally mechanistically related the PTP-like phytase (PTPLP) enzymes possesses number unique properties not observed any PTPLPs characterized date. does display catalytic activity some common protein phosphatase substrates but highly specific for hydrolysis phosphomonoester bonds inositol hexakisphosphate. structure reveals has smallest least electropositive active site all date yet substrate specificity by strict preference These two features believed be most significant contributors phytate degrading enzymes. We speculate may phosphate acquisition outside prey.

参考文章(34)
Marc R. Wilkins, Elisabeth Gasteiger, Amos Bairoch, Jean-Charles Sanchez, Keith L. Williams, Ron D. Appel, Denis F. Hochstrasser, Protein identification and analysis tools in the ExPASy server Methods of Molecular Biology. ,vol. 112, pp. 531- 552 ,(1999) , 10.1385/1-59259-584-7:531
R. Elizabeth Sockett, Carey Lambert, Bdellovibrio as therapeutic agents: a predatory renaissance? Nature Reviews Microbiology. ,vol. 2, pp. 669- 675 ,(2004) , 10.1038/NRMICRO959
Robert J. Gruninger, L. Brent Selinger, Steven C. Mosimann, Effect of ionic strength and oxidation on the P‐loop conformation of the protein tyrosine phosphatase‐like phytase, PhyAsr FEBS Journal. ,vol. 275, pp. 3783- 3792 ,(2008) , 10.1111/J.1742-4658.2008.06524.X
Jie-Oh Lee, Haijuan Yang, Maria-Magdalena Georgescu, Antonio Di Cristofano, Tomohiko Maehama, Yigong Shi, Jack E Dixon, Pier Pandolfi, Nikola P Pavletich, Crystal Structure of the PTEN Tumor Suppressor: Implications for Its Phosphoinositide Phosphatase Activity and Membrane Association Cell. ,vol. 99, pp. 323- 334 ,(1999) , 10.1016/S0092-8674(00)81663-3
Gerrit Langer, Serge X Cohen, Victor S Lamzin, Anastassis Perrakis, Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nature Protocols. ,vol. 3, pp. 1171- 1179 ,(2008) , 10.1038/NPROT.2008.91
Iris Karunker, Or Rotem, Mally Dori-Bachash, Edouard Jurkevitch, Rotem Sorek, A Global Transcriptional Switch between the Attack and Growth Forms of Bdellovibrio bacteriovorus PLoS ONE. ,vol. 8, pp. e61850- ,(2013) , 10.1371/JOURNAL.PONE.0061850
Dirk Kostrewa, Markus Wyss, Allan D’Arcy, Adolphus P.G.M van Loon, Crystal structure of Aspergillus niger pH 2.5 acid phosphatase at 2.4 Å resolution Journal of Molecular Biology. ,vol. 288, pp. 965- 974 ,(1999) , 10.1006/JMBI.1999.2736
Collaborative Computational Project, Number 4, The CCP4 suite: programs for protein crystallography Acta Crystallographica Section D-biological Crystallography. ,vol. 50, pp. 760- 763 ,(1994) , 10.1107/S0907444994003112
Boon Leong Lim, Pok Yeung, Chiwai Cheng, Jane Emily Hill, Distribution and diversity of phytate-mineralizing bacteria. The ISME Journal. ,vol. 1, pp. 321- 330 ,(2007) , 10.1038/ISMEJ.2007.40