Genetic Markers in Clinical Trials

作者: P. J. Heagerty , B. S. Weir

DOI: 10.1007/978-1-4614-5245-4_12

关键词: Linkage disequilibriumBiologySingle-nucleotide polymorphismComputational biologyQuantitative geneticsHuman genomeRegressionGenetic markerAssociation mappingSNP

摘要: The current availability of dense sets marker SNPs for the human genome is having a large impact on genetic studies and offers new possibilities clinical trials. This chapter unified basis analysis response data, emphasizing central importance correlation, or linkage disequilibrium, between SNP markers genes that affect response. It convenient to phrase development association mapping in language quantitative genetics, using additive non-additive components variance. A novel feature data good estimates can be made actual inbreeding relatedness. These are more relevant than values predicted from family pedigree, all available absence data.The dimensionality datasets has required methods appropriate number statistical comparisons, computational allow high-dimensional regression. reviewed here, as use biological annotation both viewing relevance empirical associations, structure order focus those with highest expectation outcomes under study.

参考文章(19)
Jonathan K. Pritchard, Peter Donnelly, Case-control studies of association in structured or admixed populations. Theoretical Population Biology. ,vol. 60, pp. 227- 237 ,(2001) , 10.1006/TPBI.2001.1543
Patricia McKinney, Julian P. Shield, William Wang, Heather J. Cordell, Neil Walker, John A. Todd, Patrick Concannon, Ingrid Dahlman, Iain A. Eaves, Roman Kosoy, V. Anne Morrison, Joanne Heward, Stephen C.L. Gough, Amit Allahabadia, Jayne A. Franklyn, Jaakko Tuomilehto, Eva Tuomilehto-Wolf, Francesco Cucca, Cristian Guja, Constantin Ionescu-Tirgoviste, Helen Stevens, Philippa Carr, Sarah Nutland, Parameters for reliable results in genetic association studies in common disease. Nature Genetics. ,vol. 30, pp. 149- 150 ,(2002) , 10.1038/NG825
Jeffrey G Jarvik, Bryan A Comstock, Michel Kliot, Judith A Turner, Leighton Chan, Patrick J Heagerty, William Hollingworth, Carolyn L Kerrigan, Richard A Deyo, Surgery versus non-surgical therapy for carpal tunnel syndrome: a randomised parallel-group trial. The Lancet. ,vol. 374, pp. 1074- 1081 ,(2009) , 10.1016/S0140-6736(09)61517-8
Vikas Bansal, Ondrej Libiger, Ali Torkamani, Nicholas J. Schork, Statistical analysis strategies for association studies involving rare variants Nature Reviews Genetics. ,vol. 11, pp. 773- 785 ,(2010) , 10.1038/NRG2867
Cathy C Laurie, Kimberly F Doheny, Daniel B Mirel, Elizabeth W Pugh, Laura J Bierut, Tushar Bhangale, Frederick Boehm, Neil E Caporaso, Marilyn C Cornelis, Howard J Edenberg, Stacy B Gabriel, Emily L Harris, Frank B Hu, Kevin B Jacobs, Peter Kraft, Maria Teresa Landi, Thomas Lumley, Teri A Manolio, Caitlin McHugh, Ian Painter, Justin Paschall, John P Rice, Kenneth M Rice, Xiuwen Zheng, Bruce S Weir, GENEVA Investigators, None, Quality control and quality assurance in genotypic data for genome-wide association studies. Genetic Epidemiology. ,vol. 34, pp. 591- 602 ,(2010) , 10.1002/GEPI.20516
David F. Kallmes, Bryan A. Comstock, Patrick J. Heagerty, Judith A. Turner, David J. Wilson, Terry H. Diamond, Richard Edwards, Leigh A. Gray, Lydia Stout, Sara Owen, William Hollingworth, Basavaraj Ghdoke, Deborah J. Annesley-Williams, Stuart H. Ralston, Jeffrey G. Jarvik, A randomized trial of vertebroplasty for osteoporotic spinal fractures The New England Journal of Medicine. ,vol. 361, pp. 569- 579 ,(2009) , 10.1056/NEJMOA0900563
Jon Wakefield, Bayes factors for genome-wide association studies: comparison withP-values Genetic Epidemiology. ,vol. 33, pp. 79- 86 ,(2009) , 10.1002/GEPI.20359
William G. Hill, Michael E. Goddard, Peter M. Visscher, Data and theory point to mainly additive genetic variance for complex traits PLOS Genetics. ,vol. 4, ,(2005) , 10.1371/JOURNAL.PGEN.1000008
Gregory McInnes, Sook Wah Yee, Yash Pershad, Russ B Altman, Genome-wide association studies in pharmacogenomics Nature Reviews Genetics. ,vol. 11, pp. 241- 246 ,(2010) , 10.1038/NRG2751