Recent Applications of RNA Sequencing in Food and Agriculture
作者： Venkateswara R. Sripathi , Lloyd T. Walker , Zachary B. Gossett , Varsha C. Anche
关键词: Agriculture 、 RNA 、 Biotechnology 、 Biology
摘要: … The symbiotic association between rhizobium bacteria and root nodules in leguminous plants is important in agriculture and soil metagenomics, as this interaction improves soil fertility …
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sci-hub.st 参考文章(228)
Almond Stöcker, Camille Stephan-Otto Attolini, David Rossell, Manuel Kroiss, Quantifying alternative splicing from paired-end RNA-sequencing data The Annals of Applied Statistics. ,vol. 8, pp. 309- 330 ,(2014) , 10.1214/13-AOAS687
T.-P. Yang, C. Beazley, S. B. Montgomery, A. S. Dimas, M. Gutierrez-Arcelus, B. E. Stranger, P. Deloukas, E. T. Dermitzakis, Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies Bioinformatics. ,vol. 26, pp. 2474- 2476 ,(2010) , 10.1093/BIOINFORMATICS/BTQ452
Ingrid M. Keseler, Amanda Mackie, Martin Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne Paley, Imke Schröder, Alexander G. Shearer, Pallavi Subhraveti, Mike Travers, Deepika Weerasinghe, Verena Weiss, Julio Collado-Vides, Robert P. Gunsalus, Ian Paulsen, Peter D. Karp, EcoCyc: fusing model organism databases with systems biology Nucleic Acids Research. ,vol. 41, pp. 605- 612 ,(2013) , 10.1093/NAR/GKS1027
Yi Zhao, Hui Li, Shuangsang Fang, Yue Kang, Wei wu, Yajing Hao, Ziyang Li, Dechao Bu, Ninghui Sun, Michael Q. Zhang, Runsheng Chen, NONCODE 2016: an informative and valuable data source of long non-coding RNAs Nucleic Acids Research. ,vol. 44, pp. 203- 208 ,(2016) , 10.1093/NAR/GKV1252
Yuan Sun, Han Xiao, Identification of alternative splicing events by RNA sequencing in early growth tomato fruits. BMC Genomics. ,vol. 16, pp. 948- 948 ,(2015) , 10.1186/S12864-015-2128-6
Tingting Lu, Lingling Cui, Yan Zhou, Chuanrang Zhu, Danlin Fan, Hao Gong, Qiang Zhao, Congcong Zhou, Yan Zhao, Danfeng Lu, Jianghong Luo, Yongchun Wang, Qilin Tian, Qi Feng, Tao Huang, Bin Han, Transcriptome-wide investigation of circular RNAs in rice. RNA. ,vol. 21, pp. 2076- 2087 ,(2015) , 10.1261/RNA.052282.115
Kimberly R. Kukurba, Stephen B. Montgomery, RNA Sequencing and Analysis CSH Protocols. ,vol. 2015, pp. 951- 969 ,(2015) , 10.1101/PDB.TOP084970
Christine Mayr, Evolution and Biological Roles of Alternative 3′UTRs Trends in Cell Biology. ,vol. 26, pp. 227- 237 ,(2016) , 10.1016/J.TCB.2015.10.012
Yixing Han, Shouguo Gao, Kathrin Muegge, Wei Zhang, Bing Zhou, Advanced Applications of RNA Sequencing and Challenges Bioinformatics and Biology Insights. ,vol. 2015, pp. 29- 46 ,(2015) , 10.4137/BBI.S28991
Michael I Love, Wolfgang Huber, Simon Anders, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Genome Biology. ,vol. 15, pp. 550- 550 ,(2014) , 10.1186/S13059-014-0550-8