Titratable Avidity Reduction Enhances Affinity Discrimination in Mammalian Cellular Selections of Yeast-Displayed Ligands.

作者: Lawrence A. Stern , Clifford M. Csizmar , Daniel R. Woldring , Carston R. Wagner , Benjamin J. Hackel

DOI: 10.1021/ACSCOMBSCI.6B00191

关键词: Epidermal growth factor receptor bindingAvidityBiochemistryContext (language use)ChemistryAffinity maturationYeastAffinitiesProtein engineeringPopulation

摘要: Yeast surface display selections against mammalian cell monolayers have proven effective in isolating proteins with novel binding activity. Recent advances this technique allow for the recovery of clones even micromolar affinities. However, no efficient method has been shown affinity-based selection context. This study demonstrates effectiveness titratable avidity reduction using dithiothreitol to achieve goal. A series epidermal growth factor receptor fibronectin domains a range affinities are used quantitatively identify number ligands per yeast that yield strongest selectivity between strong, moderate, and weak Notably, ligand 3,000-6,000 2 nM binder yields 16-fold better than 17 binder. These lessons applied affinity maturation an EpCAM-binding population, yielding enriched pool significantly stronger analogous sorted by standard cellular methods. Collectively, offers facile approach yeast-displayed full-length targets generating promising further applications.

参考文章(49)
Tiffany F. Chen, Seymour de Picciotto, Benjamin J. Hackel, K. Dane Wittrup, Engineering Fibronectin-Based Binding Proteins by Yeast Surface Display Methods in Enzymology. ,vol. 523, pp. 303- 326 ,(2013) , 10.1016/B978-0-12-394292-0.00014-X
Benjamin T. Porebski, Paul J. Conroy, Nyssa Drinkwater, Peter Schofield, Rodrigo Vazquez-Lombardi, Morag R. Hunter, David E. Hoke, Daniel Christ, Sheena McGowan, Ashley M. Buckle, Circumventing the stability-function trade-off in an engineered FN3 domain Protein Engineering Design & Selection. ,vol. 29, pp. 541- 550 ,(2016) , 10.1093/PROTEIN/GZW046
J.J. VanAntwerp, K.D. Wittrup, Fine affinity discrimination by yeast surface display and flow cytometry. Biotechnology Progress. ,vol. 16, pp. 31- 37 ,(2000) , 10.1021/BP990133S
Max A. Kruziki, Sumit Bhatnagar, Daniel R. Woldring, Vandon T. Duong, Benjamin J. Hackel, A 45-Amino-Acid Scaffold Mined from the PDB for High-Affinity Ligand Engineering. Chemistry & Biology. ,vol. 22, pp. 946- 956 ,(2015) , 10.1016/J.CHEMBIOL.2015.06.012
Matthias Eder, Stefan Knackmuss, Fabrice Le Gall, Uwe Reusch, Vladimir Rybin, Melvyn Little, Uwe Haberkorn, Walter Mier, Michael Eisenhut, 68Ga-labelled recombinant antibody variants for immuno-PET imaging of solid tumours European Journal of Nuclear Medicine and Molecular Imaging. ,vol. 37, pp. 1397- 1407 ,(2010) , 10.1007/S00259-010-1392-6
François Baneyx, Mirna Mujacic, Recombinant protein folding and misfolding in Escherichia coli Nature Biotechnology. ,vol. 22, pp. 1399- 1408 ,(2004) , 10.1038/NBT1029
A. Beaudry, G. Joyce, Directed evolution of an RNA enzyme Science. ,vol. 257, pp. 635- 641 ,(1992) , 10.1126/SCIENCE.1496376
Stefan Zielonka, Niklas Weber, Stefan Becker, Achim Doerner, Andreas Christmann, Christine Christmann, Christina Uth, Janine Fritz, Elena Schäfer, Björn Steinmann, Martin Empting, Pia Ockelmann, Michael Lierz, Harald Kolmar, Shark Attack: high affinity binding proteins derived from shark vNAR domains by stepwise in vitro affinity maturation. Journal of Biotechnology. ,vol. 191, pp. 236- 245 ,(2014) , 10.1016/J.JBIOTEC.2014.04.023
Margaret Ackerman, David Levary, Gabriel Tobon, Benjamin Hackel, Kelly Davis Orcutt, K. Dane Wittrup, Highly avid magnetic bead capture: an efficient selection method for de novo protein engineering utilizing yeast surface display. Biotechnology Progress. ,vol. 25, pp. 774- 783 ,(2009) , 10.1002/BTPR.174