Demographic inferences after a range expansion can be biased: the test case of the blacktip reef shark (Carcharhinus melanopterus).

作者: Pierpaolo Maisano Delser , Shannon Corrigan , Drew Duckett , Arnaud Suwalski , Michel Veuille

DOI: 10.1038/S41437-018-0164-0

关键词: Population bottleneckCarcharhinus melanopterusBiologyEvolutionary biologyPopulation geneticsReef sharkPopulation genomicsDemographic historyPopulationMetapopulation

摘要: The evolutionary history of species is a dynamic process as they modify, expand, and contract their spatial distributions over time. Range expansions (REs) occur through series founder events that are followed by migration among neighboring demes. usually results in structured metapopulations leaves distinct signature the genetic variability species. Explicitly modeling consequences complex demographic such REs computationally very intensive. Here we propose an alternative approach requires less computational effort than comprehensive RE model, but can recover demography undergoing RE, combining spatially explicit modelling with simplified realistic metapopulation models. We examine colonization Carcharhinus melanopterus, abundant reef-associated shark, test case. first used population genomics to statistically confirm occurrence C. identify its origin Indo-Australian Archipelago. Spatial identified two waves stepping-stone colonization: eastward wave moving Pacific westward one Indian Ocean. show models best describe this not accounting for may lead incorrectly interpreting observed variation signals widespread bottlenecks. Our study highlights insights be gained about coupling underscores need cautious interpretation data when advancing conservation priorities.

参考文章(54)
M. A. Beaumont, Joint determination of topology, divergence time, and immigration in population trees McDonald Institute for Archaeological Research. ,(2008)
W P Maddison, R R Hudson, M Slatkin, Estimation of levels of gene flow from DNA sequence data. Genetics. ,vol. 132, pp. 583- 589 ,(1992) , 10.1093/GENETICS/132.2.583
Olivier Mazet, Willy Rodríguez, Lounès Chikhi, Demographic inference using genetic data from a single individual: Separating population size variation from population structure Theoretical Population Biology. ,vol. 104, pp. 46- 58 ,(2015) , 10.1016/J.TPB.2015.06.003
Benjamin M. Peter, Montgomery Slatkin, Detecting range expansions from genetic data. Evolution. ,vol. 67, pp. 3274- 3289 ,(2013) , 10.1111/EVO.12202
Stephan Schiffels, Richard Durbin, Inferring human population size and separation history from multiple genome sequences Nature Genetics. ,vol. 46, pp. 919- 925 ,(2014) , 10.1038/NG.3015
Nicolas Ray, Mathias Currat, Laurent Excoffier, Intra-Deme Molecular Diversity in Spatially Expanding Populations Molecular Biology and Evolution. ,vol. 20, pp. 76- 86 ,(2003) , 10.1093/MOLBEV/MSG009
LAURENT EXCOFFIER, HEIDI E. L. LISCHER, Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows Molecular Ecology Resources. ,vol. 10, pp. 564- 567 ,(2010) , 10.1111/J.1755-0998.2010.02847.X
Laurent Excoffier, Isabelle Dupanloup, Emilia Huerta-Sánchez, Vitor C. Sousa, Matthieu Foll, Robust Demographic Inference from Genomic and SNP Data PLoS Genetics. ,vol. 9, pp. e1003905- ,(2013) , 10.1371/JOURNAL.PGEN.1003905
S. Ramachandran, O. Deshpande, C. C. Roseman, N. A. Rosenberg, M. W. Feldman, L. L. Cavalli-Sforza, Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa Proceedings of the National Academy of Sciences of the United States of America. ,vol. 102, pp. 15942- 15947 ,(2005) , 10.1073/PNAS.0507611102
Grant Hamilton, Mathias Currat, Nicolas Ray, Gerald Heckel, Mark Beaumont, Laurent Excoffier, Bayesian estimation of recent migration rates after a spatial expansion Genetics. ,vol. 170, pp. 409- 417 ,(2005) , 10.1534/GENETICS.104.034199