The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes

作者: Ross Overbeek , Tadhg Begley , Ralph M Butler , Jomuna V Choudhuri , Han-Yu Chuang

DOI: 10.1093/NAR/GKI866

关键词: AnnotationControlled vocabularyGenomicsInformation retrievalThe Internet1000 Genomes ProjectGenomeBiologyGeneticsGenome projectVertebrate and Genome Annotation Project

摘要: The release of the 1000 th complete microbial genome will occur in the next two to three years. In anticipation of this milestone, the Fellowship for Interpretation of Genomes (FIG) …

参考文章(31)
Kay Tanaka, Yasuyuki Ikeda, Yoichi Matsubara, David B. Hamyna, Molecular basis of isovaleric acidemia and medium-chain acyl-CoA dehydrogenase deficiency. Enzyme. ,vol. 38, pp. 91- 107 ,(1987) , 10.1159/000469195
Tadhg P Begley, Cynthia Kinsland, Erick Strauss, The biosynthesis of coenzyme A in bacteria. Vitamins and Hormones Series. ,vol. 61, pp. 157- 171 ,(2001) , 10.1016/S0083-6729(01)61005-7
Robert D Fleischmann, Mark D Adams, Owen White, Rebecca A Clayton, Ewen F Kirkness, Anthony R Kerlavage, Carol J Bult, Jean-Francois Tomb, Brian A Dougherty, Joseph M Merrick, Keith McKenney, Granger Sutton, Will FitzHugh, Chris Fields, Jeannine D Gocayne, John Scott, Robert Shirley, Li-lng Liu, Anna Glodek, Jenny M Kelley, Janice F Weidman, Cheryl A Phillips, Tracy Spriggs, Eva Hedblom, Matthew D Cotton, Teresa R Utterback, Michael C Hanna, David T Nguyen, Deborah M Saudek, Rhonda C Brandon, Leah D Fine, Janice L Fritchman, Joyce L Fuhrmann, NSM Geoghagen, Cheryl L Gnehm, Lisa A McDonald, Keith V Small, Claire M Fraser, Hamilton O Smith, J Craig Venter, Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. ,vol. 269, pp. 496- 512 ,(1995) , 10.1126/SCIENCE.7542800
Martijn A Huynen, Berend Snel, Christian von Mering, Peer Bork, Function prediction and protein networks Current Opinion in Cell Biology. ,vol. 15, pp. 191- 198 ,(2003) , 10.1016/S0955-0674(03)00009-7
Leisl A. Brand, Erick Strauss, Characterization of a new pantothenate kinase isoform from Helicobacter pylori. Journal of Biological Chemistry. ,vol. 280, pp. 20185- 20188 ,(2005) , 10.1074/JBC.C500044200
Ference J Loupatty, Jos P N Ruiter, Lodewijk IJlst, Marinus Duran, Ronald J A Wanders, Direct Nonisotopic Assay of 3-Methylglutaconyl-CoA Hydratase in Cultured Human Skin Fibroblasts to Specifically Identify Patients with 3-Methylglutaconic Aciduria Type I Clinical Chemistry. ,vol. 50, pp. 1447- 1450 ,(2004) , 10.1373/CLINCHEM.2004.033142
Winfried März, Heinrich Wieland, HMG-CoA reductase inhibition: anti-inflammatory effects beyond lipid lowering? Herz. ,vol. 25, pp. 117- 125 ,(2000) , 10.1007/PL00001949
R Overbeek, N Larsen, W Smith, N Maltsev, E Selkov, Representation of function: the next step Gene. ,vol. 191, pp. GC1- GC9 ,(1997) , 10.1016/S0378-1119(96)00854-2
Walter Weyler, Lawrence Sweetman, Dominic C. Maggio, William L. Nyhan, Deficiency of propionyl-CoA carboxylase and methylcrotonyl-CoA carboxylase in a patient with methylcrotonylglycinuria Clinica Chimica Acta. ,vol. 76, pp. 321- 328 ,(1977) , 10.1016/0009-8981(77)90158-9