Molecular Recognition of Agonists and Antagonists by the Nucleotide-Activated G Protein-Coupled P2Y2 Receptor

作者: Muhammad Rafehi , Alexander Neumann , Younis Baqi , Enas M. Malik , Michael Wiese

DOI: 10.1021/ACS.JMEDCHEM.7B00854

关键词: Purinergic P2Y Receptor AgonistsG proteinBiochemistryReceptorChemistryPurinergic P2Y Receptor AntagonistsDocking (molecular)Virtual screeningAgonistHomology modelingMolecular medicineDrug discovery

摘要: A homology model of the nucleotide-activated P2Y2R was created based on X-ray structures P2Y1 receptor. Docking studies were performed, and receptor mutants to probe identified binding interactions. Mutation residues predicted interact with ribose (Arg110) phosphates nucleotide agonists (Arg265, Arg292) or that contribute indirectly (Tyr288) abolished activity. The Y114F, R194A, F261A mutations led inactivity diadenosine tetraphosphate a reduced response UTP. Significant reduction in agonist potency observed for all other (Phe111, His184, Ser193, Phe261, Tyr268, Tyr269) be involved recognition. An ionic lock between Asp185 Arg292 is probably activation interacts phosphate groups. antagonist AR-C118925 anthraquinones likely bind orthosteric site. updated models will useful virtual screening drug design.

参考文章(67)
Kaihua Zhang, Jin Zhang, Zhan-Guo Gao, Dandan Zhang, Lan Zhu, Gye Won Han, Steven M. Moss, Silvia Paoletta, Evgeny Kiselev, Weizhen Lu, Gustavo Fenalti, Wenru Zhang, Christa E. Müller, Huaiyu Yang, Hualiang Jiang, Vadim Cherezov, Vsevolod Katritch, Kenneth A. Jacobson, Raymond C. Stevens, Beili Wu, Qiang Zhao, Structure of the human P2Y12 receptor in complex with an antithrombotic drug Nature. ,vol. 509, pp. 115- 118 ,(2014) , 10.1038/NATURE13083
Maria P. Abbracchio, Geoffrey Burnstock, Jean-Marie Boeynaems, Eric A. Barnard, José L. Boyer, Charles Kennedy, Gillian E. Knight, Marta Fumagalli, Christian Gachet, Kenneth A. Jacobson, Gary A. Weisman, International Union of Pharmacology LVIII: Update on the P2Y G Protein-Coupled Nucleotide Receptors: From Molecular Mechanisms and Pathophysiology to Therapy Pharmacological Reviews. ,vol. 58, pp. 281- 341 ,(2006) , 10.1124/PR.58.3.3
T. Kendall Harden, Eduardo R. Lazarowski, Robert A. Nicholas, Qing Li, William C. Watt, Uridine nucleotide selectivity of three phospholipase C-activating P2 receptors: identification of a UDP-selective, a UTP-selective, and an ATP- and UTP-specific receptor. Molecular Pharmacology. ,vol. 50, pp. 224- 229 ,(1996)
Marcus Stamm, René Staritzbichler, Kamil Khafizov, Lucy R. Forrest, AlignMe—a membrane protein sequence alignment web server Nucleic Acids Research. ,vol. 42, pp. 246- 251 ,(2014) , 10.1093/NAR/GKU291
S. Ibuka, S. Matsumoto, S. Fujii, A. Kikuchi, The P2Y2 receptor promotes Wnt3a- and EGF-induced epithelial tubular formation by IEC6 cells by binding to integrins Journal of Cell Science. ,vol. 128, pp. 2156- 2168 ,(2015) , 10.1242/JCS.169060
Rainer Schäfer, Fariba Sedehizade, Tobias Welte, Georg Reiser, ATP- and UTP-activated P2Y receptors differently regulate proliferation of human lung epithelial tumor cells. American Journal of Physiology-lung Cellular and Molecular Physiology. ,vol. 285, ,(2003) , 10.1152/AJPLUNG.00447.2002
Fabian Sievers, Andreas Wilm, David Dineen, Toby J Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez, Hamish McWilliam, Michael Remmert, Johannes Söding, Julie D Thompson, Desmond G Higgins, Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega Molecular Systems Biology. ,vol. 7, pp. 539- 539 ,(2011) , 10.1038/MSB.2011.75
Laurie Erb, Jun Liu, Jonathan Ockerhausen, Qiongman Kong, Richard C. Garrad, Korey Griffin, Chris Neal, Brent Krugh, Laura I. Santiago-Pérez, Fernando A. González, Hattie D. Gresham, John T. Turner, Gary A. Weisman, An Rgd Sequence in the P2y2 Receptor Interacts with αVβ3 Integrins and Is Required for Go-Mediated Signal Transduction Journal of Cell Biology. ,vol. 153, pp. 491- 502 ,(2001) , 10.1083/JCB.153.3.491
Helen M Berman, Tammy Battistuz, Talapady N Bhat, Wolfgang F Bluhm, Philip E Bourne, Kyle Burkhardt, Zukang Feng, Gary L Gilliland, Lisa Iype, Shri Jain, Phoebe Fagan, Jessica Marvin, David Padilla, Veerasamy Ravichandran, Bohdan Schneider, Narmada Thanki, Helge Weissig, John Westbrook, Christine Zardecki, The Protein Data Bank Nucleic Acids Research. ,vol. 28, pp. 235- 242 ,(2000) , 10.1093/NAR/28.1.235
Laurie Erb, Katarzyna Koziak, Robert Jarzyna, Marcia Wink, Olaf Guckelberger, Krzysztof Blusztajn, Vickery Trinkaus-Randall, Gary Weisman, Simon Robson, Elzbieta Kaczmarek, Modulation of endothelial cell migration by extracellular nucleotides Involvement of focal adhesion kinase and phosphatidylinositol 3-kinase-mediated pathways Thrombosis and Haemostasis. ,vol. 93, pp. 735- 742 ,(2005) , 10.1160/TH04-09-0576