Emerging Computational Methods for Predicting Chemically Induced Mutagenicity

作者: Shraddha Pandit , Alok Dhawan , Ramakrishnan Parthasarathi

DOI: 10.1016/B978-0-12-809252-1.00008-0

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摘要: Abstract Assessment and characterization of toxicological properties chemicals, active pharmaceutical ingredients, drugs are essential for the safety human health environment. Current regulatory framework assessment genotoxic impurities recommends combining genotoxicity/carcinogenicity in vivo in vitro assays with computational prediction as an integrated manner. Development in silico tools genotoxicity is promising, application predictive methods constantly increasing. A large number reports have described importance aspect studying identifying various domains toxicity its endpoints. Various such quantitative structure–activity relationships (QSAR), virtual screening, molecular dynamics simulation, docking, etc. been used identification mutagens well mutagenic interactions DNA. This chapter presents current trend available information on diverse techniques applied their capability DNA modification.

参考文章(47)
Nigel Greene, Krista L. Dobo, Michelle O. Kenyon, Jennifer Cheung, Jennifer Munzner, Zhanna Sobol, Gregory Sluggett, Todd Zelesky, Andreas Sutter, Joerg Wichard, A practical application of two in silico systems for identification of potentially mutagenic impurities. Regulatory Toxicology and Pharmacology. ,vol. 72, pp. 335- 349 ,(2015) , 10.1016/J.YRTPH.2015.05.008
Chris Barber, Alexander Amberg, Laura Custer, Krista L. Dobo, Susanne Glowienke, Jacky Van Gompel, Steve Gutsell, Jim Harvey, Masamitsu Honma, Michelle O. Kenyon, Naomi Kruhlak, Wolfgang Muster, Lidiya Stavitskaya, Andrew Teasdale, Jonathan Vessey, Joerg Wichard, Establishing best practise in the application of expert review of mutagenicity under ICH M7. Regulatory Toxicology and Pharmacology. ,vol. 73, pp. 367- 377 ,(2015) , 10.1016/J.YRTPH.2015.07.018
Fuart Gatnik Mojca, Lapenna Silvia, Worth Andrew, Review of QSAR Models and Software Tools for predicting Acute and Chronic Systemic Toxicity Publications Office of the European Union. ,(2010) , 10.2788/60766
Matthew D. Segall, Chris Barber, Addressing Toxicity Risk when Designing and Selecting Compounds in Early Drug Discovery Drug Discovery Today. ,vol. 19, pp. 688- 693 ,(2014) , 10.1016/J.DRUDIS.2014.01.006
Berk Hess, Carsten Kutzner, David van der Spoel, Erik Lindahl, GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation Journal of Chemical Theory and Computation. ,vol. 4, pp. 435- 447 ,(2008) , 10.1021/CT700301Q
Saranjit Singh, Tarun Handa, Mallikarjun Narayanam, Archana Sahu, Mahendra Junwal, Ravi P. Shah, A critical review on the use of modern sophisticated hyphenated tools in the characterization of impurities and degradation products Journal of Pharmaceutical and Biomedical Analysis. ,vol. 69, pp. 148- 173 ,(2012) , 10.1016/J.JPBA.2012.03.044
Patrick A. Holt, Jonathan B. Chaires, John O. Trent, Molecular docking of intercalators and groove-binders to nucleic acids using Autodock and Surflex. Journal of Chemical Information and Modeling. ,vol. 48, pp. 1602- 1615 ,(2008) , 10.1021/CI800063V
Errol Zeiger, History and rationale of genetic toxicity testing: an impersonal, and sometimes personal, view. Environmental and Molecular Mutagenesis. ,vol. 44, pp. 363- 371 ,(2004) , 10.1002/EM.20062
S EKINS, Y NIKOLSKY, T NIKOLSKAYA, Techniques: application of systems biology to absorption, distribution, metabolism, excretion and toxicity. Trends in Pharmacological Sciences. ,vol. 26, pp. 202- 209 ,(2005) , 10.1016/J.TIPS.2005.02.006
Heiko Kuhn, Vadim V. Demidov, James M. Coull, Mark J. Fiandaca, Brian D. Gildea, Maxim D. Frank-Kamenetskii, Hybridization of DNA and PNA molecular beacons to single-stranded and double-stranded DNA targets Journal of the American Chemical Society. ,vol. 124, pp. 1097- 1103 ,(2002) , 10.1021/JA0041324