Nonequilibrium associative retrieval of multiple stored self-assembly targets.

作者: Gili Bisker , Jeremy L. England

DOI: 10.1073/PNAS.1805769115

关键词:

摘要: Many biological systems rely on the ability to self-assemble different target structures using same set of components. Equilibrium self-assembly suffers from a limited capacity in such cases, due an increasing number decoy states that grows rapidly with targets encoded. Moreover, improving kinetic stability at equilibrium carries price introducing traps, leading slower assembly. Using toy physical model interacting particles, we demonstrate local driving can improve both assembly time and multitarget self-assembly, as well reduce fluctuations around configuration. We further show drive result steady-state probability distribution over deviates Boltzmann way depends types interactions stabilize targets. Our results illustrate role nonequilibrium plays overcoming tradeoffs are inherent assemblies.

参考文章(70)
Charlotte Aumeier, Laura Schaedel, Jérémie Gaillard, Karin John, Laurent Blanchoin, Manuel Théry, None, Self-repair promotes microtubule rescue Nature Cell Biology. ,vol. 18, pp. 1054- 1064 ,(2016) , 10.1038/NCB3406
Christopher J. Fullerton, Robert L. Jack, Optimising self-assembly through time-dependent interactions Journal of Chemical Physics. ,vol. 145, pp. 244505- ,(2016) , 10.1063/1.4972861
Weishun Zhong, David J. Schwab, Arvind Murugan, Associative Pattern Recognition Through Macro-molecular Self-Assembly Journal of Statistical Physics. ,vol. 167, pp. 806- 826 ,(2017) , 10.1007/S10955-017-1774-2
H. Hess, Jennifer L. Ross, Non-equilibrium assembly of microtubules: from molecules to autonomous chemical robots. Chemical Society Reviews. ,vol. 46, pp. 5570- 5587 ,(2017) , 10.1039/C7CS00030H
Rongkuo Zhao, Yuan Wang, Xiang Zhang, Nicolas Bachelard, Chad Ropp, Marc Dubois, Emergence of an enslaved phononic bandgap in a non-equilibrium pseudo-crystal Nature Materials. ,vol. 16, pp. 808- 813 ,(2017) , 10.1038/NMAT4920
Grant M. Rotskoff, Phillip L. Geissler, Robust nonequilibrium pathways to microcompartment assembly. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 115, pp. 6341- 6346 ,(2018) , 10.1073/PNAS.1802499115
Robert Marsland, Jeremy L. England, Active regeneration unites high- and low-temperature features in cooperative self-assembly. Physical Review E. ,vol. 98, pp. 022411- ,(2018) , 10.1103/PHYSREVE.98.022411
Luvena L. Ong, Nikita Hanikel, Omar K. Yaghi, Casey Grun, Maximilian T. Strauss, Patrick Bron, Josephine Lai-Kee-Him, Florian Schueder, Bei Wang, Pengfei Wang, Jocelyn Y. Kishi, Cameron Myhrvold, Allen Zhu, Ralf Jungmann, Gaetan Bellot, Yonggang Ke, Peng Yin, Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components Nature. ,vol. 552, pp. 72- 77 ,(2017) , 10.1038/NATURE24648
Jeremy L. England, Nikolay Perunov, Robert Alvin Marsland, Statistical Physics of Adaptation Physical Review Letters. ,(2016)
Marco Baiesi, Christian Maes, Life efficiency does not always increase with the dissipation rate Journal of Physics Communications. ,vol. 2, pp. 045017- ,(2018) , 10.1088/2399-6528/AAB654