Aromatic compound-degrading taxa in an anoxic coal seam microbiome from the Surat Basin, Australia.

作者: Ian T Paulsen , Simon C George , Paul Greenfield , David J Midgley , Se Gong

DOI: 10.1093/FEMSEC/FIAB053

关键词:

摘要: Methane is an important energy resource internationally, and a large proportion of this methane produced by microbial communities living in coal seams. Despite the value for human security, our understanding metabolic roles played specific taxa during biodegradation to situ quite limited. In order develop greater catabolism on coal, community from seam Surat Basin, Australia, was incubated 10 different aromatic organic compounds: coronene, benzo[a]pyrene, pyrene, phenanthrene, naphthalene, ethylbenzene, phenol, benzoate, vanillate syringate. Each these compounds either occurs or possible product process. 16S rRNA sequencing revealed substantial changes each response carbon substrate provided. Abundant substrate-specific were identified their probable catabolic proposed based literature searches related taxa. This study first link substrates available environments. Two conceptual models putative degradation pathways key responsible are proposed.

参考文章(94)
D Grimes, G Okpokwasili, R Colwell, C Somerville, Plasmid-associated phenathrene degradation by Chesapeake Bay sediment bacteria. 2. Colloque International de Bacteriologie Marine, Brest (France), 1-5. ,(1984)
Daniel Ritter, David Vinson, Elliott Barnhart, Denise M. Akob, Matthew W. Fields, Al B. Cunningham, William Orem, Jennifer C. McIntosh, Enhanced microbial coalbed methane generation: A review of research, commercial activity, and remaining challenges International Journal of Coal Geology. ,vol. 146, pp. 28- 41 ,(2015) , 10.1016/J.COAL.2015.04.013
L R Krumholz, R L Crawford, M E Hemling, M P Bryant, Metabolism of gallate and phloroglucinol in Eubacterium oxidoreducens via 3-hydroxy-5-oxohexanoate. Journal of Bacteriology. ,vol. 169, pp. 1886- 1890 ,(1987) , 10.1128/JB.169.5.1886-1890.1987
Cynthia A. Rice, Margaret S. Ellis, John H. Bullock, Water co-produced with coalbed methane in the Powder River basin, Wyoming; preliminary compositional data Open-File Report. ,(2000) , 10.3133/OFR00372
E.A. Wolin, M.J. Wolin, R.S. Wolfe, Formation of Methane by Bacterial Extracts Journal of Biological Chemistry. ,vol. 238, pp. 2882- 2886 ,(1963) , 10.1016/S0021-9258(18)67912-8
H A Ball, H A Johnson, M Reinhard, A M Spormann, Initial reactions in anaerobic ethylbenzene oxidation by a denitrifying bacterium, strain EB1. Journal of Bacteriology. ,vol. 178, pp. 5755- 5761 ,(1996) , 10.1128/JB.178.19.5755-5761.1996
Ronald M. Atlas, Handbook of microbiological media ,(1993)
So-Jeong Kim, Soo-Je Park, In-Tae Cha, Deullae Min, Jin-Seog Kim, Won-Hyung Chung, Jong-Chan Chae, Che Ok Jeon, Sung-Keun Rhee, Metabolic versatility of toluene-degrading, iron-reducing bacteria in tidal flat sediment, characterized by stable isotope probing-based metagenomic analysis Environmental Microbiology. ,vol. 16, pp. 189- 204 ,(2014) , 10.1111/1462-2920.12277
Alma E. Parada, David M. Needham, Jed A. Fuhrman, Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples Environmental Microbiology. ,vol. 18, pp. 1403- 1414 ,(2016) , 10.1111/1462-2920.13023