SNP-Based Genetic Linkage Map of Soybean Using the SoySNP6K Illumina Infinium BeadChip Genotyping Array
作者： Masum Akond , Shiming Liu , Lauren Schoener , James A. Anderson , Stella K. Kantartzi
关键词:
摘要: This study reports a high density genetic linkage map based on the ‘Maryland 96-5722’ by ‘Spencer’ recombinant inbred line (RIL) population of soybean [Glycine max (L.) Merr.] and constructed exclusively with single nucleotide polymorphism (SNP) markers. The Illumina Infinium SoySNP6K BeadChip genotyping array produced 5,376 SNPs in mapping population, 96.75% success rate. Significant level goodness-of-fit for each locus was tested observed vs. expected ratio (1:1). Out markers, 1,465 fit 1:1 segregation rate having ≤20% missing data plus heterozygosity among RILs. Among this 1,456 just 657 were polymorphic between parents DNAs tested. These mapped using JoinMap 4.0 software 550 distributed 16 groups (LGs) 20 chromosomes genome. total length 201.57 centiMorgans (cM) an average marker 0.37 cM. is one SNP-based maps that will be used scientific community to quantitative trait loci (QTL) identify candidate genes important agronomic traits soybean.
sci-hub.st 参考文章(43)
Eleni Bachlava, Christopher A Taylor, Shunxue Tang, John E Bowers, Jennifer R Mandel, John M Burke, Steven J Knapp, None, SNP Discovery and Development of a High-Density Genotyping Array for Sunflower PLOS ONE. ,vol. 7, ,(2012) , 10.1371/JOURNAL.PONE.0029814
Sung-Chur Sim, Gregor Durstewitz, Jörg Plieske, Ralf Wieseke, Martin W. Ganal, Allen Van Deynze, John P. Hamilton, C. Robin Buell, Mathilde Causse, Saranga Wijeratne, David M. Francis, Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato PLoS ONE. ,vol. 7, pp. e40563- ,(2012) , 10.1371/JOURNAL.PONE.0040563
Q. J. Song, L. F. Marek, R. C. Shoemaker, K. G. Lark, V. C. Concibido, X. Delannay, J. E. Specht, P. B. Cregan, A new integrated genetic linkage map of the soybean. Theoretical and Applied Genetics. ,vol. 109, pp. 122- 128 ,(2004) , 10.1007/S00122-004-1602-3
Qijian Song, David L. Hyten, Gaofeng Jia, Charles V. Quigley, Edward W. Fickus, Randall L. Nelson, Perry B. Cregan, Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean PLoS ONE. ,vol. 8, pp. e54985- ,(2013) , 10.1371/JOURNAL.PONE.0054985
Feng Tian, Peter J Bradbury, Patrick J Brown, Hsiaoyi Hung, Qi Sun, Sherry Flint-Garcia, Torbert R Rocheford, Michael D McMullen, James B Holland, Edward S Buckler, Genome-wide association study of leaf architecture in the maize nested association mapping population Nature Genetics. ,vol. 43, pp. 159- 162 ,(2011) , 10.1038/NG.746
K. Shirasawa, S. Isobe, H. Hirakawa, E. Asamizu, H. Fukuoka, D. Just, C. Rothan, S. Sasamoto, T. Fujishiro, Y. Kishida, M. Kohara, H. Tsuruoka, T. Wada, Y. Nakamura, S. Sato, S. Tabata, SNP Discovery and Linkage Map Construction in Cultivated Tomato DNA Research. ,vol. 17, pp. 381- 391 ,(2010) , 10.1093/DNARES/DSQ024
J. J. Zou, R. J. Singh, J. Lee, S. J. Xu, P. B. Cregan, T. Hymowitz, Assignment of molecular linkage groups to soybean chromosomes by primary trisomics. Theoretical and Applied Genetics. ,vol. 107, pp. 745- 750 ,(2003) , 10.1007/S00122-003-1304-2
David L. Hyten, Qijian Song, Ik-Young Choi, Mun-Sup Yoon, James E. Specht, Lakshmi K. Matukumalli, Randall L. Nelson, Randy C. Shoemaker, Nevin D. Young, Perry B. Cregan, High-throughput genotyping with the GoldenGate assay in the complex genome of soybean Theoretical and Applied Genetics. ,vol. 116, pp. 945- 952 ,(2008) , 10.1007/S00122-008-0726-2
V. N. Njiti, K. Meksem, M. J. Iqbal, J. E. Johnson, My. A. Kassem, K. F. Zobrist, V. Y. Kilo, D. A. Lightfoot, Common loci underlie field resistance to soybean sudden death syndrome in Forrest, Pyramid, Essex, and Douglas. Theoretical and Applied Genetics. ,vol. 104, pp. 294- 300 ,(2002) , 10.1007/S001220100682
Régine Delourme, Cyril Falentin, Berline Fomeju, Marie Boillot, Gilles Lassalle, Isabelle André, Jorge Duarte, Valérie Gauthier, Nicole Lucante, Amandine Marty, Maryline Pauchon, Jean-Philippe Pichon, Nicolas Ribière, Gwenn Trotoux, Philippe Blanchard, Nathalie Rivière, Jean-Pierre Martinant, Jérôme Pauquet, High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L BMC Genomics. ,vol. 14, pp. 120- 120 ,(2013) , 10.1186/1471-2164-14-120